FreeSurfer Course, October 4 and 5, 2010

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, October 4th - Introduction / Single Subject / Group Analysis

Time

Title

Type

Lecturer

8:00 - 8:30

optional - Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly

tutorial

Allison Stevens

8:30 - 9:00

optional - Intro to FreeSurfer Jargon

talk

Allison Stevens

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Introduction to Freesurfer

talk

Bruce Fischl

9:30 - 10:00

Accuracy, Reliability and Validation

talk

David Salat

10:00 - 11:00

Analyzing the Individual Subject

talk

Doug Greve

11:00 - 11:15

break

11:15 - 11:45

Tkmedit/Tksurfer demonstration

demo

Doug Greve

11:45 - 12:15

Interaction with Individual Subject Data Tutorial

tutorial

staff

12:15 - 1:15

Lunch

--

--

12:30 - 1:00

Optional Lunch Talk- MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

1:15 - 2:00

FreeSurfer Applications

talk

David Salat

2:00 - 2:30

Surface-based Smoothing/Surface-based Registration

talk

Doug Greve

2:30 - 2:45

break

2:45 - 3:30

Group Analysis / GLM / Multiple Comparisons

talk

Mert Sabuncu

3:30 - 4:30

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

4:30 - 4:45

QDEC demonstration

demo

Nick Schmansky

4:45 - 5:30

Group Analysis - qdec Tutorial

tutorial

staff

5:30 -

optional - FreeSurfer Installation on Personal Laptops

one-on-one

Nick Schmansky

5:30 -

optional - Start Processing Your Own Data

one-on-one

Allison Stevens

Boston Beer Works location information here.
Meet us at 6:10pm at the front of Building 149 (the entrance on the opposite side of the building from where the Course is held).
If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station. From there, you cross the street and go down Canal Street. Boston Beer Works will be on your left.

Tuesday, October 5th - ROIs / Troubleshooting / Multi-Modal / Q&A / Future Directions

Time

Title

Type

Lecturer

9:00 - 10:00

ROI Analysis

talk

Doug Greve

10:00 - 10:30

ROI Analysis Tutorial

tutorial

staff

10:30 - 11:00

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

11:00 - 11:15

break

11:15 - 11:45

Failure Modes

talk

Bruce Fischl

11:45 - 12:45

Troubleshooting Demonstration, Troubleshooting Tutorial

tutorial

staff, Allison

12:45 - 1:45

Lunch

--

--

12:45 - 1:15

Optional Lunch Talk- Quality Checking a Recon

demo

Allison Stevens

1:45 - 3:00

Multi-Modal Integration

talk

Doug Greve

3:00 - 3:45

Multi-Modal Integration Tutorial

tutorial

staff

3:45 - 4:00

break

4:00 - 4:20

Combined Volume and Surface Registration

talk

Lilla Zollei

4:20 - 5:30

Future Directions of FreeSurfer:

4:20 - 4:40

Motion-compensated neuroanatomical imaging

talk

Dylan Tisdall

4:40 - 5:10

Inferring architectonic boundaries from in-vivo MRI

talk

Bruce Fischl

5:10- 5:30

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Lilla Zollei

5:30 - 6:00

Question and Answer Session, FsQuiz............FsQuizAnswers

talk

staff

The FreeSurfer Evaluation is here!

FsTutorial/Oct2010CourseSchedule (last edited 2010-10-05 16:28:23 by AllisonStevens)