#!/bin/tcsh -f

#
# morph_tables-rh
#
# REPLACE_WITH_ONE_LINE_SHORT_DESCRIPTION
#
# Original Author: REPLACE_WITH_FULL_NAME_OF_CREATING_AUTHOR
# CVS Revision Info:
#    $Author: nicks $
#    $Date: 2007/01/06 00:01:14 $
#    $Revision: 1.2 $
#
# Copyright (C) 2002-2007,
# The General Hospital Corporation (Boston, MA).
# All rights reserved.
#
# Distribution, usage and copying of this software is covered under the
# terms found in the License Agreement file named 'COPYING' found in the
# FreeSurfer source code root directory, and duplicated here:
# https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferOpenSourceLicense
#
# General inquiries: freesurfer@nmr.mgh.harvard.edu
# Bug reports: analysis-bugs@nmr.mgh.harvard.edu
#

pushd $SUBJECTS_DIR/$1/
touch NOTES
echo " " >> NOTES
echo $0 $* >> NOTES
whoami >> NOTES
date >> NOTES
hostname >> NOTES
popd


set hemi = rh

pushd $SUBJECTS_DIR/$1/scripts
set SVIT_DIR    = $SUBJECTS_DIR/$1/svit
if (-e $SVIT_DIR == 0) \
    mkdir $SVIT_DIR ;\
endif

set SLF = $SVIT_DIR/$hemi.sphere.reg.svit.log
mri-structvits -subject $1 -umask 0 \
		-hemi $hemi -outdir $SVIT_DIR -can sphere.reg | tee -a $SLF

popd
