#! /bin/tcsh -ef

#
# deface_subject
#
# REPLACE_WITH_ONE_LINE_SHORT_DESCRIPTION
#
# Original Author: REPLACE_WITH_FULL_NAME_OF_CREATING_AUTHOR
# CVS Revision Info:
#    $Author: nicks $
#    $Date: 2007/01/06 00:01:13 $
#    $Revision: 1.2 $
#
# Copyright (C) 2002-2007,
# The General Hospital Corporation (Boston, MA).
# All rights reserved.
#
# Distribution, usage and copying of this software is covered under the
# terms found in the License Agreement file named 'COPYING' found in the
# FreeSurfer source code root directory, and duplicated here:
# https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferOpenSourceLicense
#
# General inquiries: freesurfer@nmr.mgh.harvard.edu
# Bug reports: analysis-bugs@nmr.mgh.harvard.edu
#


set s=$1
set fdir=$FREESURFER_HOME
set adir=$fdir/average
set mdir=$SUBJECTS_DIR/$s/mri
if (-e $mdir/orig/COR-001 == 0) then
	 set ORIG=orig.mgz
else
	 set ORIG=orig
endif
mri_deface $mdir/$ORIG $fdir/average/talairach_mixed_with_skull.gca $adir/face.gca $mdir/orig_defaced.mgz
