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trac-all

Index

Contents

  1. Name
  2. Usage
  3. Arguments
    1. Required Arguments
    2. Optional Arguments
    3. Fully-Automated Directive
    4. Manual-Intervention Workflow Directives

Name

trac-all : Performs reconstruction of white matter pathways using an atlas of underlying anatomy

Usage

trac-all

-[Directive] -c <Configuration File> (Using Configuration File to set analysis options)

trac-all

-[Directive] -subject subjectname -i dicomfile

Arguments

Required Arguments

-subject subjid

the subject data upon which to operate (If not specified in the Configuration File)

-[Directive]

one or more directives (see next)

Optional Arguments

-c dmrirc

Configuration File to set analysis options

Fully-Automated Directive

-all

do everything, including preprocessing, bedpostx and pathway reconstruction

Manual-Intervention Workflow Directives

-prep

Process steps 1.1 -1.6 (see below)

-bedp

Process step 2

-path

Process step 3

trac-all (last edited 2021-12-08 16:06:06 by AnastasiaYendiki)