|
Size: 660
Comment:
|
Size: 937
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 13: | Line 13: |
| == Arguments == === Required Arguments === |
= Arguments = == Required Arguments == |
| Line 19: | Line 18: |
| === Optional Arguments === | == Optional Arguments == || -c dmrirc || Configuration File to set analysis options || |
| Line 21: | Line 21: |
| || -c dmrirc || Configuration File to set analysis options ||; | == Fully-Automated Directive == || -all || do everything, including preprocessing, bedpostx and pathway reconstruction || == Manual-Intervention Workflow Directives == || -prep || Process steps 1.1 -1.6 (see below) || || -bedp || Process step 2 || || -path || Process step 3 || |
trac-all
Index
Contents
Name
trac-all : Performs reconstruction of white matter pathways using an atlas of underlying anatomy
Usage
trac-all |
-[Directive] -c <Configuration File> (Using Configuration File to set analysis options) |
trac-all |
-[Directive] -subject subjectname -i dicomfile |
Arguments
Required Arguments
-subject subjid |
the subject data upon which to operate (If not specified in the Configuration File) |
-[Directive] |
one or more directives (see next) |
Optional Arguments
-c dmrirc |
Configuration File to set analysis options |
Fully-Automated Directive
-all |
do everything, including preprocessing, bedpostx and pathway reconstruction |
Manual-Intervention Workflow Directives
-prep |
Process steps 1.1 -1.6 (see below) |
-bedp |
Process step 2 |
-path |
Process step 3 |