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| Deletions are marked like this. | Additions are marked like this. |
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| == Arguments == | = Arguments = == Required Arguments == |
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| '''Required Arguments''' || -subject subjid || the subject data upon which to operate ((If not specified in the Configuration File) || |
|| -subject subjid || the subject data upon which to operate (If not specified in the Configuration File) || |
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| '''Optional Arguments''' | == Optional Arguments == |
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| || -c dmrirc || Configuration File to set analysis options || | || -c dmrirc || Configuration File to set analysis options || == Fully-Automated Directive == || -all || do everything, including preprocessing, bedpostx and pathway reconstruction || == Manual-Intervention Workflow Directives == || -prep || Process steps 1.1 -1.6 (see below) || || -bedp || Process step 2 || || -path || Process step 3 || |
trac-all
Index
Contents
Name
trac-all : Performs reconstruction of white matter pathways using an atlas of underlying anatomy
Usage
trac-all |
-[Directive] -c <Configuration File> (Using Configuration File to set analysis options) |
trac-all |
-[Directive] -subject subjectname -i dicomfile |
Arguments
Required Arguments
-subject subjid |
the subject data upon which to operate (If not specified in the Configuration File) |
-[Directive] |
one or more directives (see next) |
Optional Arguments
-c dmrirc |
Configuration File to set analysis options |
Fully-Automated Directive
-all |
do everything, including preprocessing, bedpostx and pathway reconstruction |
Manual-Intervention Workflow Directives
-prep |
Process steps 1.1 -1.6 (see below) |
-bedp |
Process step 2 |
-path |
Process step 3 |