|
Size: 1285
Comment:
|
Size: 1428
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| ## see CommandTemplate and dtrecon as exmaples | ## See HelpOnCommandTemplate for description of formatting ## ## Note: If you are modifying this page please refer to the ## CommandTemplate page and confirm that this page has the latest ## CommandTemplate formatting [[Navigation(children)]] '''Index''' [[TableOfContents]] |
| Line 3: | Line 12: |
| {{{ | |
| Line 5: | Line 13: |
| }}} | |
| Line 7: | Line 15: |
| {{{ mri_tessellate <option> <input volume> <label-value> <output surface> }}} |
mri_tessellate [<options>] invol labelvalue outsurf |
| Line 11: | Line 17: |
| = Positional Arguments = {{{ <input volume> COR, .mgh, or .mgz volume |
= Arguments = == Positional Arguments == || invol || input volume || || labelvalue || integer, if input is filled volume, 127 is rh, 255 is lh || || outsurf || binary surface of the tessellation || |
| Line 16: | Line 23: |
| <label-value> integer, if input is filled volume, 127 is rh, 255 is lh |
== Required Flagged Arguments == None |
| Line 19: | Line 26: |
| <output surface> binary surface of the tessellation }}} = Optional Flagged Arguments = {{{ -a tessellate the surface of all voxels with different labels -n save surface with real RAS coordinates where c_(r,a,s) != 0 }}} |
== Optional Flagged Arguments == || -a || tessellate the surface of all voxels with different labels || || -n || save surface with real RAS coordinates where c_(r,a,s) != 0 || |
| Line 34: | Line 31: |
| {{{ surface file, typically ?h.orig }}} |
|| outsurf || surface file, typically ?h.orig || |
| Line 38: | Line 33: |
| = Example 1 = {{{ |
= Description = description = Examples = == Example 1 == |
| Line 41: | Line 39: |
| }}} | |
| Line 43: | Line 40: |
| = Example 2 = {{{ |
== Example 2 == |
| Line 46: | Line 43: |
| }}} | = Bugs = None |
| Line 51: | Line 51: |
| = Author = JaneSmith |
= Links = FreeSurfer |
| Line 54: | Line 54: |
| = Links = FreeSurfer, FsFast |
= Methods Description = {{{ ?? }}} |
| Line 58: | Line 60: |
| ## For example: ["Belliveau1991"] NameYear |
["References/Lastname###"] |
| Line 64: | Line 65: |
| = Methods Description = {{{ description description }}} = Category = ## For example: CategoryFreeSurferCommandVolumeConversion Category``Stream``Function |
= Author/s = BruceFischl |
Navigation(children) Index TableOfContents
Name
mri_tessellate - creates surface by tessellating given input volume
Synopsis
mri_tessellate [<options>] invol labelvalue outsurf
Arguments
Positional Arguments
invol |
input volume |
labelvalue |
integer, if input is filled volume, 127 is rh, 255 is lh |
outsurf |
binary surface of the tessellation |
Required Flagged Arguments
None
Optional Flagged Arguments
-a |
tessellate the surface of all voxels with different labels |
-n |
save surface with real RAS coordinates where c_(r,a,s) != 0 |
Outputs
outsurf |
surface file, typically ?h.orig |
Description
description
Examples
Example 1
mri_tessellate $SUBJECTS_DIR/subjid/mri/filled 127 rh.orig
Example 2
mri_tessellate $SUBJECTS_DIR/subjid/mri/aseg 17 lh.hippocampus
Bugs
None
See Also
["othercommand1"], ["othercommand2"]
Links
Methods Description
??
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>