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| ## If you are modifying this page please take a look at the ## CommandTemplate page and check that this page has the latest |
## See HelpOnCommandTemplate for description of formatting ## ## Note: If you are modifying this page please refer to the ## CommandTemplate page and confirm that this page has the latest |
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| <<Navigation(children)>> '''Index''' <<TableOfContents>> |
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| {{{ inorm-sess }}} |
inorm-sess - intensity normalize data |
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| {{{ inorm-sess -s [sessid] or -sf [sessidfile] -d [srchdir] or -df [srchdirfile] [<options>] }}} |
inorm-sess -s sessid -d srchdir [<options>] <<BR>> inorm-sess -sf sessidfile -df srchdirfile [<options>] |
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| = Positional Arguments = {{{ |
= Arguments = == Positional Arguments == |
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| }}} | |
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| = Required Flagged Arguments = {{{ -s [sessid] or -sf [sessidfile] description |
== Required Flagged Arguments == || -s sessid or -sf sessidfile || description || || -d srchdir or -df srchdirfile || description || |
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| -d [srchdir] or -df [srchdirfile] description }}} = Optional Flagged Arguments = {{{ -thresh threshold : fraction of global mean to separate brain and air -motioncor : inorm the motion corrected volumes -funcstem stem : stem of functional volume (default: f or fmc) -rlf runlistfile : -umask umask : set unix file permission mask -version : print version and exit }}} |
== Optional Flagged Arguments == || -thresh threshold || fraction of global mean to separate brain and air || || -motioncor || inorm the motion corrected volumes || || -funcstem stem || stem of functional volume (default: f or fmc) || || -rlf runlistfile || || || -umask umask || set unix file permission mask to [umask] || || -version || print version and exit || |
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| {{{ volume1 - description volume2 - description }}} = Example 1 = {{{ command foo -i f -o out description }}} = Example 2 = {{{ command foo -i f -o out -f fvalue description }}} = See Also = ["othercommand1"], ["othercommand2"] = Author/s = JaneSmith = Links = FreeSurfer, FsFast |
|| volume1 || description || |
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| = Examples = == Example 1 == ?? == Example 2 == ?? = Bugs = none = See Also = [[spatialsmooth-sess]] = Links = FsFast = Methods Description = {{{ ?? }}} |
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| ## For example: ["Belliveau1991"] NameYear |
References/NameYear |
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| = Methods Description = ## Suitable for cutting and pasting into publication. ## No WikiLinks should be used. {{{ description description }}} = Category = ## For example: CategoryFreeSurferCommandVolumeConversion Category``Stream``Function |
= Author/s = DougGreve |
Index
Contents
Name
inorm-sess - intensity normalize data
Synopsis
inorm-sess -s sessid -d srchdir [<options>]
inorm-sess -sf sessidfile -df srchdirfile [<options>]
Arguments
Positional Arguments
none
Required Flagged Arguments
-s sessid or -sf sessidfile |
description |
-d srchdir or -df srchdirfile |
description |
Optional Flagged Arguments
-thresh threshold |
fraction of global mean to separate brain and air |
-motioncor |
inorm the motion corrected volumes |
-funcstem stem |
stem of functional volume (default: f or fmc) |
-rlf runlistfile |
|
-umask umask |
set unix file permission mask to [umask] |
-version |
print version and exit |
Outputs
volume1 |
description |
Description
description
Examples
Example 1
??
Example 2
??
Bugs
none
See Also
Links
Methods Description
??
References
References/NameYear
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>