Diff for "freesurferstats2table"

Differences between revisions 2 and 17 (spanning 15 versions)

This applescript can be used to control asegstats2table and aparcstats2table commands in order to generate text/ascii tables of freesurfer stats data for all subjects in the directory at once using 4 mouse clicks! Please click on the link below to download script;

freesurferstats2table

This script is suitable for MAC only.

The main purpose of this script is to simplify and automate conversion process because subjects’ IDs should be written with some options in the command line depending on freesurfer stats file. So users will not need to write any thing when they use this script instead of command line;

aseg.stats and wmparc.stats

asegstats2table --subjects bert ernie fred margaret --meas volume --tablefile aseg_stats.txt

?h.aparc.stats

aparcstats2table --subjects bert ernie fred margaret --hemi rh --meas thickness --tablefile aparc_stats.txt

?h.aparc.2009s.stats

aparcstats2table --hemi lh --subjects bert ernie fred margaret -- parc aparc.a2009s --meas volume --tablefile lh.aparc.a2009s.volume.txt

?h.BA.stats

aparcstats2table --hemi lh --subjects bert ernie fred margaret -- parc BA --meas volume --tablefile lh.BA.volume.txt

-  ⇤ ← Revision 2 as of 2011-07-07 21:04:40 → 
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+   ← Revision 17 as of 2011-07-07 21:23:35 → ⇥
  Size: 1390
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-Deletions are marked like this.
+Additions are marked like this.
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+Line 4:
-  [[http://web.me.com/jamaan/EASYNEUROIMAGING/Nuroimaging_blog/Entries/2011/3/10_freesurfer_stats2table_(asegstats2table_and_aparcstats2table)_files/freesurferstats2table.zip|freesurferstats2table]]
+[[http://web.me.com/jamaan/EASYNEUROIMAGING/Nuroimaging_blog/Entries/2011/3/10_freesurfer_stats2table_(asegstats2table_and_aparcstats2table)_files/freesurferstats2table.zip|freesurferstats2table]]
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+'''This script is suitable for MAC only.'''
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+Line 12:
-  This script is suitable for MAC only.
+'''aseg.stats and wmparc.stats'''
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+Line 14:
-  '''For aseg.stats and wmparc.stats'''
+asegstats2table --subjects bert ernie fred margaret --meas volume --tablefile aseg_stats.txt
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+Line 16:
- asegstats2table --subjects bert ernie fred margaret --meas volume --tablefile aseg_stats.txt
+'''?h.aparc.stats'''
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+Line 18:
-  '''For ?h.aparc.stats '''
+aparcstats2table --subjects bert ernie fred margaret --hemi rh --meas thickness --tablefile aparc_stats.txt
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+Line 20:
- aparcstats2table --subjects bert ernie fred margaret --hemi rh --meas thickness --tablefile aparc_stats.txt
+'''?h.aparc.2009s.stats'''
 
aparcstats2table --hemi lh --subjects bert ernie fred margaret -- parc aparc.a2009s --meas volume --tablefile lh.aparc.a2009s.volume.txt
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+Line 24:
-  '''For ?h.aparc.2009s.stats '''
+'''?h.BA.stats'''
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+Line 26:
- aparcstats2table --hemi lh --subjects bert ernie fred margaret -- parc aparc.a2009s --meas volume --tablefile lh.aparc.a2009s.volume.txt

  '''For'''''' ''''''?h.BA.stats'''

 aparcstats2table --hemi lh --subjects bert ernie fred margaret -- parc BA --meas volume --tablefile lh.BA.volume.txt
+aparcstats2table --hemi lh --subjects bert ernie fred margaret -- parc BA --meas volume --tablefile lh.BA.volume.txt