Diff for "freesurferstats2table"

Differences between revisions 1 and 17 (spanning 16 versions)

This applescript can be used to control asegstats2table and aparcstats2table commands in order to generate text/ascii tables of freesurfer stats data for all subjects in the directory at once using 4 mouse clicks! Please click on the link below to download script;

freesurferstats2table

This script is suitable for MAC only.

The main purpose of this script is to simplify and automate conversion process because subjects’ IDs should be written with some options in the command line depending on freesurfer stats file. So users will not need to write any thing when they use this script instead of command line;

aseg.stats and wmparc.stats

asegstats2table --subjects bert ernie fred margaret --meas volume --tablefile aseg_stats.txt

?h.aparc.stats

aparcstats2table --subjects bert ernie fred margaret --hemi rh --meas thickness --tablefile aparc_stats.txt

?h.aparc.2009s.stats

aparcstats2table --hemi lh --subjects bert ernie fred margaret -- parc aparc.a2009s --meas volume --tablefile lh.aparc.a2009s.volume.txt

?h.BA.stats

aparcstats2table --hemi lh --subjects bert ernie fred margaret -- parc BA --meas volume --tablefile lh.BA.volume.txt

-  ⇤ ← Revision 1 as of 2011-07-07 21:03:59 → 
  Size: 1431
  Editor: 2
  Comment:
+   ← Revision 17 as of 2011-07-07 21:23:35 → ⇥
  Size: 1390
  Editor: 2
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
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+Please click on the link below to download script;
-Line 3:
+Line 4:
- Please click on the link below to download script;
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-  [[http://web.me.com/jamaan/EASYNEUROIMAGING/Nuroimaging_blog/Entries/2011/3/10_freesurfer_stats2table_(asegstats2table_and_aparcstats2table)_files/freesurferstats2table.zip|freesurferstats2table]]
+[[http://web.me.com/jamaan/EASYNEUROIMAGING/Nuroimaging_blog/Entries/2011/3/10_freesurfer_stats2table_(asegstats2table_and_aparcstats2table)_files/freesurferstats2table.zip|freesurferstats2table]]
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-  The main purpose of this script is to simplify and automate conversion process because subjects’ IDs should be written with some options in the command line depending on freesurfer stats file. So users will not need to write any thing when they use this script instead of command line;
-Line 9:
+Line 8:
-  This script is suitable for MAC only.
+'''This script is suitable for MAC only.'''
-Line 11:
+Line 10:
-  '''For aseg.stats and wmparc.stats'''
+The main purpose of this script is to simplify and automate conversion process because subjects’ IDs should be written with some options in the command line depending on freesurfer stats file. So users will not need to write any thing when they use this script instead of command line;
-Line 13:
+Line 12:
- asegstats2table --subjects bert ernie fred margaret --meas volume --tablefile aseg_stats.txt
+'''aseg.stats and wmparc.stats'''
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+Line 14:
-  '''For ?h.aparc.stats '''
+asegstats2table --subjects bert ernie fred margaret --meas volume --tablefile aseg_stats.txt
-Line 17:
+Line 16:
- aparcstats2table --subjects bert ernie fred margaret --hemi rh --meas thickness --tablefile aparc_stats.txt
+'''?h.aparc.stats'''
-Line 19:
+Line 18:
-  '''For ?h.aparc.2009s.stats '''
+aparcstats2table --subjects bert ernie fred margaret --hemi rh --meas thickness --tablefile aparc_stats.txt
-Line 21:
+Line 20:
- aparcstats2table --hemi lh --subjects bert ernie fred margaret -- parc aparc.a2009s --meas volume --tablefile lh.aparc.a2009s.volume.txt
+'''?h.aparc.2009s.stats'''
 
aparcstats2table --hemi lh --subjects bert ernie fred margaret -- parc aparc.a2009s --meas volume --tablefile lh.aparc.a2009s.volume.txt
-Line 23:
+Line 24:
-  '''For'''''' ''''''?h.BA.stats'''
+'''?h.BA.stats'''
-Line 25:
+Line 26:
- aparcstats2table --hemi lh --subjects bert ernie fred margaret -- parc BA --meas volume --tablefile lh.BA.volume.txt
+aparcstats2table --hemi lh --subjects bert ernie fred margaret -- parc BA --meas volume --tablefile lh.BA.volume.txt