Differences between revisions 3 and 9 (spanning 6 versions)
⇤ ← Revision 3 as of 2006-11-17 13:43:54 →
Size: 355
Editor: NickSchmansky
Comment:
← Revision 9 as of 2008-04-29 11:45:40 → ⇥
Size: 1072
Editor: localhost
Comment: converted to 1.6 markup
Deletions are marked like this. Additions are marked like this.
Line 3: Line 3:
 * asegstats2table aparcstats2table ([[http://surfer.nmr.mgh.harvard.edu/fswiki/asegstats2table|done]] and [[http://surfer.nmr.mgh.harvard.edu/fswiki/aparcstats2table|done]])
 * update [[http://surfer.nmr.mgh.harvard.edu/fswiki/mri_5fsegment|mri_segment]], specifically add description of how and when to use -wlo and -whi to fix problems. add links in tutorial fixer section to this page. also update source-code to include same text.
 
 * mri_label2label, mris_anatomical_stats, in conjunction with doing a group analysis and checking results, getting stats out.
Line 4: Line 8:
 * update [http://surfer.nmr.mgh.harvard.edu/fswiki/mri_5fsegment mri_segment], specifically add description of how and when to use -wlo and -whi to fix problems. add links in tutorial fixer section to this page. also update source-code to include same text.  * aseg.stats, ?h.aparc.stats

 * the aseg gray matter shouldn't be used - that the surface should be. And we should really use the surfaces to generate wm estimates as well. Xiao has a program called mris_volume that will compute the volume inside a surface. The volumes would be:

gm volume = pial volume - white volume
wm volume = white volume - (ventricles+caudate+putamen+pallidum+thalamus)
Line 7: Line 16:

To Do

  • create page to list stuff to put on wiki page (done! way to go Jenni!)

  • asegstats2table aparcstats2table (done and done)

  • update mri_segment, specifically add description of how and when to use -wlo and -whi to fix problems. add links in tutorial fixer section to this page. also update source-code to include same text.

  • mri_label2label, mris_anatomical_stats, in conjunction with doing a group analysis and checking results, getting stats out.
  • aseg.stats, ?h.aparc.stats
  • the aseg gray matter shouldn't be used - that the surface should be. And we should really use the surfaces to generate wm estimates as well. Xiao has a program called mris_volume that will compute the volume inside a surface. The volumes would be:

gm volume = pial volume - white volume wm volume = white volume - (ventricles+caudate+putamen+pallidum+thalamus)

WikiToDo (last edited 2008-04-29 11:45:40 by localhost)