Differences between revisions 91 and 101 (spanning 10 versions)

FreeSurfer Tutorials

The FreeSurfer tutorials provided below are designed to give users an introduction to using FreeSurfer, as well as get you acquainted with the concepts needed to perform its various modes of analysis and processing of MRI data. The tutorials are designed to be followed along in a terminal window, where commands can be copy/pasted into the terminal window instead of typed.

In order to run any of the FreeSurfer tutorials, you must have a valid FreeSurfer installation on your machine, and a local copy of the tutorial data. Be sure to set the TUTORIAL_DATA environment variable properly as specified on the tutorial data page.

WARNING: The hyperlinks below used to download slides will NOT WORK in Google Chrome. Please use a different browser to access these slides.

version 7.0+

Basics:

Introduction to FreeSurfer Output

version 6.0+

Basics:

Specialized topics:

Other:

Multiple Comparisons via command-line (slides, video)

version 5.1/5.3

Data for the 5.1/5.3 tutorials can be found on the bottom of the tutorial data page.

Basics:

Specialized topics:

-  ⇤ ← Revision 91 as of 2022-08-12 15:40:28 → 
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+   ← Revision 101 as of 2022-11-28 14:29:23 → ⇥
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+'''WARNING: The hyperlinks below used to download slides will NOT WORK in Google Chrome. Please use a different browser to access these slides.'''
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- * [[FsTutorial/OutputData_freeviewV6.0|Introduction to FreeSurfer Output]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.pptx|slides]], [[https://www.youtube.com/watch?v=8Ict0Erh7_c|video]])
 * [[FsTutorial/Practice| Practice Working with Data]]
 * [[FsTutorial/TroubleshootingDataV6.0|Troubleshooting FreeSurfer Output]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|slides]], [[https://www.youtube.com/watch?v=gf0BC0xs0tM|video]])
 * [[FsTutorial/GroupAnalysisV6.0|Group Analysis]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ERL.ppt|slides]], [[https://www.youtube.com/watch?v=EJewud8obuo|video]])
+ * [[FsTutorial/OutputData_freeviewV6.0|Introduction to FreeSurfer Output]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.sep2022.pptx|slides]], [[https://www.youtube.com/watch?v=8Ict0Erh7_c|video]])
 * [[FsTutorial/PracticeV6.0| Practice Working with Data]]
 * [[FsTutorial/TroubleshootingDataV6.0|Troubleshooting FreeSurfer Output]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.troubleshooting.sep2022.ppt|slides]], [[https://www.youtube.com/watch?v=gf0BC0xs0tM|video]])
 * [[FsTutorial/GroupAnalysisV6.0|Group Analysis]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/GLM.pptx|slides]], [[https://www.youtube.com/watch?v=EJewud8obuo|video]])
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- ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ERL.ppt|slides]])
+ ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/GLM.pptx|slides]])
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- * [[FsTutorial/AnatomicalROIV6.0|ROI Analysis]] ( [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.pptx|slides]], [[https://www.youtube.com/watch?v=n5QkCwZZPko|video]])
 * [[MultiModalTutorialV6.0|Multimodal Analysis]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part1.pptx|slides- Part 1]], [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part2.pptx|slides- Part 2]], [[https://www.youtube.com/watch?v=gRl6bYF06hg|video]])
+ * [[FsTutorial/AnatomicalROIV6.0|ROI Analysis]] ( [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.EB_wiki.pptx|slides]], [[https://www.youtube.com/watch?v=n5QkCwZZPko|video]])
 * [[MultiModalTutorialV6.0|Multimodal Analysis]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal1_2018.pptx|slides- Part 1]], [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part2.pptx|slides- Part 2]], [[https://www.youtube.com/watch?v=gRl6bYF06hg|video]])
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- * [[FsFastTutorialV6.0|FS-Fast - fMRI Analysis]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|slides]])
+ * [[FsFastTutorialV6.0|FS-Fast - fMRI Analysis]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.ppt|slides]])
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+Line 34:
- ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ERL.ppt|slides]], [[https://www.youtube.com/watch?v=EJewud8obuo|video]])
+ ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/multiplecomparisons.ppt|slides]], [[https://www.youtube.com/watch?v=EJewud8obuo|video]])