|
Size: 5616
Comment: added practice tutorial to 6.0 section
|
← Revision 102 as of 2022-11-28 14:31:36 ⇥
Size: 6043
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 6: | Line 6: |
| === version 6.0 === | == WARNING: The hyperlinks in the tables below used to download slides will NOT WORK in Google Chrome. Please use a different browser to access these slides. == === version 7.0+ === Basics: * [[FsTutorial/OutputData_freeview|Introduction to FreeSurfer Output]] === version 6.0+ === |
| Line 9: | Line 15: |
| * [[FsTutorial/OutputData_freeview|Introduction to FreeSurfer Output]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|slides]], [[https://www.youtube.com/watch?v=8Ict0Erh7_c|video]]) * [[FsTutorial/Practice| Practice Working with Data]] * [[FsTutorial/TroubleshootingDataV6.0|Troubleshooting FreeSurfer Output]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|slides]], [[https://www.youtube.com/watch?v=gf0BC0xs0tM|video]]) * [[FsTutorial/GroupAnalysisV6.0|Group Analysis]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ERL.ppt|slides]], [[https://www.youtube.com/watch?v=EJewud8obuo|video]]) * [[FsTutorial/MultipleComparisonsV6.0|Multiple Comparisons via command-line]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ERL.ppt|slides]], [[https://www.youtube.com/watch?v=EJewud8obuo|video]]) |
* [[FsTutorial/OutputData_freeviewV6.0|Introduction to FreeSurfer Output]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.sep2022.pptx|slides]], [[https://www.youtube.com/watch?v=8Ict0Erh7_c|video]]) * [[FsTutorial/PracticeV6.0| Practice Working with Data]] * [[FsTutorial/TroubleshootingDataV6.0|Troubleshooting FreeSurfer Output]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.troubleshooting.sep2022.ppt|slides]], [[https://www.youtube.com/watch?v=gf0BC0xs0tM|video]]) * [[FsTutorial/GroupAnalysisV6.0|Group Analysis]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/GLM.pptx|slides]], [[https://www.youtube.com/watch?v=EJewud8obuo|video]]) * [[FsTutorial/MultipleComparisonsV6.0Perm|Multiple Comparisons via command-line (Permutation)]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/GLM.pptx|slides]]) |
| Line 16: | Line 22: |
| * [[FsTutorial/AnatomicalROIV6.0|ROI Analysis]] ( [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|slides]], [[https://www.youtube.com/watch?v=n5QkCwZZPko|video]]) * [[MultiModalTutorialV6.0|Multimodal Analysis]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part1.pptx|slides- Part 1]], [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part2.pptx|slides- Part 2]], [[https://www.youtube.com/watch?v=gRl6bYF06hg|video]]) |
* [[FsTutorial/AnatomicalROIV6.0|ROI Analysis]] ( [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.EB_wiki.pptx|slides]], [[https://www.youtube.com/watch?v=n5QkCwZZPko|video]]) * [[MultiModalTutorialV6.0|Multimodal Analysis]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal1_2018.pptx|slides- Part 1]], [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part2.pptx|slides- Part 2]], [[https://www.youtube.com/watch?v=gRl6bYF06hg|video]]) |
| Line 21: | Line 27: |
| * [[FsTutorial/LongitudinalTutorial|Longitudinal Processing, Edits and Post-Processing]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|slides]], [[https://www.youtube.com/watch?v=vxJODPBLd3M|video]]) | * [[FsTutorial/LongitudinalTutorial|Longitudinal Processing, Edits and Post-Processing]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.longitudinal.pptx|slides]], [[https://www.youtube.com/watch?v=vxJODPBLd3M|video]]) |
| Line 24: | Line 30: |
| * [[FsFastTutorialV6.0|FS-Fast - fMRI Analysis]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|slides]]) | * [[FsFastTutorialV6.0|FS-Fast - fMRI Analysis]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.ppt|slides]]) Other: * [[FsTutorial/MultipleComparisonsV6.0|Multiple Comparisons via command-line]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/multiplecomparisons.ppt|slides]], [[https://www.youtube.com/watch?v=EJewud8obuo|video]]) |
| Line 33: | Line 43: |
| * [[FsTutorial/OutputData_freeview|Introduction to FreeSurfer Output]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|slides]], [[https://www.youtube.com/watch?v=8Ict0Erh7_c|video]]) | * [[FsTutorial/OutputData_freeviewV6.0|Introduction to FreeSurfer Output]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|slides]], [[https://www.youtube.com/watch?v=8Ict0Erh7_c|video]]) |
| Line 42: | Line 52: |
| * [[FsTutorial/LongitudinalTutorial|Longitudinal Processing, Edits and Post-Processing]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|slides]], [[https://www.youtube.com/watch?v=vxJODPBLd3M|video]]) | * [[FsTutorial/LongitudinalTutorialV5|Longitudinal Processing, Edits and Post-Processing]] ([[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|slides]], [[https://www.youtube.com/watch?v=vxJODPBLd3M|video]]) |
FreeSurfer Tutorials
The FreeSurfer tutorials provided below are designed to give users an introduction to using FreeSurfer, as well as get you acquainted with the concepts needed to perform its various modes of analysis and processing of MRI data. The tutorials are designed to be followed along in a terminal window, where commands can be copy/pasted into the terminal window instead of typed.
In order to run any of the FreeSurfer tutorials, you must have a valid FreeSurfer installation on your machine, and a local copy of the tutorial data. Be sure to set the TUTORIAL_DATA environment variable properly as specified on the tutorial data page.
WARNING: The hyperlinks in the tables below used to download slides will NOT WORK in Google Chrome. Please use a different browser to access these slides.
version 7.0+
Basics:
version 6.0+
Basics:
Specialized topics:
Other:
version 5.1/5.3
Data for the 5.1/5.3 tutorials can be found on the bottom of the tutorial data page.
Basics:
Specialized topics:
Longitudinal Processing, Edits and Post-Processing (slides, video)
Diffusion Analysis Diffusion and DTI Integration (slides, video)