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| [[FreeSurferWiki|top]] | [[FsTutorial|next]] | = FreeSurfer Tutorials = |
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| = FreeSurfer and FS-Fast Tutorials = | In order to run any of the freesurfer tutorials you must have valid freesurfer installation on your machine, and a local copy of the [[FsTutorial/Data|tutorial data]]. |
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| * [[FsTutorial|FreeSurfer tutorials]]: * Interaction with Output Data ([[FsTutorial/OutputData_freeview|Freeview]]) ([[FsTutorial/OutputData_tktools|TkTools]]) * [[FsTutorial/TroubleshootingData|Troubleshooting Data, Edits]] * [[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Processing, Edits and Post-Processing]] * Group Analysis ([[FsTutorial/GroupAnalysis|Freeview]]) ([[FsTutorial/GroupAnalysis_tktools|TkTools]]) * Group Analysis in QDEC ([[FsTutorial/QdecGroupAnalysis_freeview|Freeview]]) ([[FsTutorial/QdecGroupAnalysis_tktools|TkTools]]) * Anatomical ROI ([[FsTutorial/AnatomicalROI|Freeview]]) ([[FsTutorial/AnatomicalROI_tktools|TkTools]]) * [[FsTutorial/Diffusion|Diffusion]] * [[FsTutorial/Tracula|Tracula]] * Multi Modal tutorial ([[FsTutorial/MultiModal_freeview|Freeview]]) ([[FsTutorial/MultiModal_tktools|TkTools]]) * [[FsFastTutorial|FS-Fast tutorial]] * [[FsTutorial/FslFeatFreeSurfer|FSL-FreeSurfer tutorial]] ## * [[http://www.ee.surrey.ac.uk/Teaching/Unix/|Unix Tutorial]] |
Basics: *[[FsTutorial/OutputData_freeview|Intro to FreeSurfer Output]] *[[FsTutorial/TroubleshootingData|Troubleshooting FreeSurfer Output]] *[[FsTutorial/GroupAnalysis|Group Analysis via command-line]] *[[FsTutorial/QdecGroupAnalysis_freeview|Group Analysis via GUI]] *[[FsTutorial/AnatomicalROI|ROI Analysis]] *[[FsTutorial/MultiModal_freeview|Multimodal Analysis]] Specialized topics: * [[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Processing, Edits and Post-Processing]] * [[FsTutorial/Diffusion|Diffusion Analysis]] * [[FsTutorial/Tracula|Tracula Analysis]] * [[FsFastTutorial|FS-Fast, fMRI Analysis]] * [[FsTutorial/FslFeatFreeSurfer|FSL-FreeSurfer integration]] Old versions of tutorials which use tkmedit or tksurfer (no longer updated as of May 2014): *[[FsTutorial/OutputData_tktools|Intro to FreeSurfer Output]] *[[FsTutorial/GroupAnalysis_tktools|Group Analysis via command-line]] *[[FsTutorial/QdecGroupAnalysis_tktools|Group Analysis via GUI]] *[[FsTutorial/AnatomicalROI_tktools|ROI Analysis]] *[[FsTutorial/MultiModal_tktools|Multimodal Analysis]] *[[FsTutorial/LongitudinalTutorial_tktools|Longitudinal Processing, Edits and Post-Processing]] |
FreeSurfer Tutorials
In order to run any of the freesurfer tutorials you must have valid freesurfer installation on your machine, and a local copy of the tutorial data.
Basics:
Specialized topics:
Old versions of tutorials which use tkmedit or tksurfer (no longer updated as of May 2014):