Diff for "ThirdPartySoftware"

Differences between revisions 2 and 5 (spanning 3 versions)

OpenNeuro
3D Slicer
FSL
AFNI/NIfTI/SUMA
SPM - Statistical Parametric Mapping
NITRC
iSurf - iPhone/iPad app
Nipype - Neuroimaging in Python, w/ FreeSurfer interfaces
Mindboggle-101 data - Manually labeled anatomical regions for 101 healthy subjects
MNE - M/EEG data analysis using FreeSurfer meshes and surface registration
Brainstorm - See Integration with FreeSurfer
Cgrid Toolbox - A toolbox for imposing cartesian grids on FreeSurfer ROIs
MINC Toolkit
- Note: the MINC toolkit is already included in the Freesurfer 'full' installation (in $FREESURFER_HOME/mni)
- Source code bundle and README
- Pre-built binaries:

-  ⇤ ← Revision 2 as of 2016-06-08 15:03:30 → 
  Size: 1521
  Editor: AllisonStevens
  Comment:
+   ← Revision 5 as of 2019-07-17 17:34:18 → ⇥
  Size: 1682
  Editor: AndrewHoopes
  Comment: Add cgrid toolbox
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+ * [[OpenNeuro]]
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-=== MINC Toolkit ===
 * Note: the MINC toolkit is already included in the Freesurfer 'full' installation (in $FREESURFER_HOME/mni)
 * Source code [[https://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/src/mni-1.4-srcbuild.tar.gz|bundle]] and [[https://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/src/mni.srcbuild.README.txt|README]]
 * Pre-built binaries:
  * [[https://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/binaries/rh9/mni-1.4_rh9.tar.gz|Linux rh9,fc2,centos4]]
  * [[https://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/binaries/centos4_x86_64/mni-1.4-centos4_x86_64.tar.gz|Linux centos4_x86_64]]
  * [[https://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/binaries/tiger/packages-MacOSX-tiger.tar.gz|Mac OS X]]
+ * [[https://github.com/mathijsraemaekers/Cgrid-toolbox|Cgrid Toolbox]] - A toolbox for imposing cartesian grids on !FreeSurfer ROIs
 * MINC Toolkit 
   * Note: the MINC toolkit is already included in the Freesurfer 'full' installation (in $FREESURFER_HOME/mni)
   * Source code [[https://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/src/mni-1.4-srcbuild.tar.gz|bundle]] and [[https://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/src/mni.srcbuild.README.txt|README]]
   * Pre-built binaries:
     * [[https://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/binaries/rh9/mni-1.4_rh9.tar.gz|Linux rh9,fc2,centos4]]
     * [[https://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/binaries/centos4_x86_64/mni-1.4-centos4_x86_64.tar.gz|Linux centos4_x86_64]]
     * [[https://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/binaries/tiger/packages-MacOSX-tiger.tar.gz|Mac OS X]]