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FreeSurfer now automatically runs automated labeling of the brain volume and this is included in the BasicReconstruction workflow.
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However, if you have processed your anatomical data using the HistoricalReconstruction workflow, but you also wish to obtain automated labels of the neuroanatomical structures in the brain, then you must run the subcortical segmentation separately.

[wiki:FreeSurferWorkFlows top] | [wiki:HistoricalReconstruction previous]

FreeSurfer Subcortical Segmentation Work Flow

FreeSurfer now automatically runs automated labeling of the brain volume and this is included in the BasicReconstruction workflow.

However, if you have processed your anatomical data using the HistoricalReconstruction workflow, but you also wish to obtain automated labels of the neuroanatomical structures in the brain, then you must run the subcortical segmentation separately.

SubcorticalSegmentation (last edited 2018-01-04 15:07:58 by MorganFogarty)