| # |
Date |
Size |
|
Editor |
Comment |
Action |
| 277 |
2017-02-17 11:53:55 |
18835 |
to previous |
LeeTirrell |
Updated to point to 6.0 as the most stable release |
view |
| 276 |
2016-06-16 16:30:23 |
18836 |
to previous |
AllisonMoreau |
added link to 5.3 table |
view |
| 275 |
2016-05-19 15:39:17 |
18835 |
to previous |
NickSchmansky |
fixed DKTatlas references |
view |
| 274 |
2016-05-19 15:35:30 |
18836 |
to previous |
NickSchmansky |
added -mprage flags, removed surfvolume stage |
view |
| 273 |
2016-05-19 15:14:49 |
19018 |
to previous |
NickSchmansky |
removed no_neck stages |
view |
| 272 |
2016-05-19 15:01:51 |
19976 |
to previous |
NickSchmansky |
updates for v6 |
view |
| 271 |
2016-05-19 13:55:52 |
20046 |
to previous |
NickSchmansky |
command updates to match v6 |
view |
| 270 |
2015-06-22 14:46:16 |
20069 |
to previous |
NickSchmansky |
added --stop 1e4 --shrink 2 to both nu_correct commands |
view |
| 269 |
2015-06-17 17:03:28 |
20036 |
to previous |
NickSchmansky |
|
view |
| 268 |
2015-06-08 20:05:38 |
20009 |
to previous |
NickSchmansky |
nuintensitycor moved from autorecon2 to autorecon1 |
view |
| 267 |
2015-05-12 15:04:59 |
20037 |
to previous |
NickSchmansky |
removed -label-ec-exvivo-avg step, since EC_exvivo_average.label now looks the same as entorhinal_exvivo.label |
view |
| 266 |
2015-05-08 15:10:05 |
20260 |
to previous |
NickSchmansky |
|
view |
| 265 |
2015-05-08 15:07:16 |
20257 |
to previous |
NickSchmansky |
|
view |
| 264 |
2015-05-08 14:10:48 |
20185 |
to previous |
NickSchmansky |
|
view |
| 263 |
2015-05-08 14:09:34 |
20168 |
to previous |
NickSchmansky |
|
view |
| 262 |
2015-04-22 16:40:38 |
20029 |
to previous |
NickSchmansky |
|
view |
| 261 |
2015-04-20 11:28:16 |
20192 |
to previous |
AllisonMoreau |
|
view |
| 260 |
2015-04-20 11:27:30 |
20189 |
to previous |
AllisonMoreau |
|
view |
| 259 |
2015-04-20 11:26:21 |
20187 |
to previous |
AllisonMoreau |
|
view |
| 258 |
2015-04-20 11:20:06 |
20179 |
to previous |
AllisonMoreau |
|
view |
| 257 |
2015-04-03 10:47:56 |
20173 |
to previous |
NickSchmansky |
|
view |
| 256 |
2015-04-02 15:18:07 |
20171 |
to previous |
NickSchmansky |
added -c ctrl_pts.mgz to mri_ca_normalize, -relabel_unlikely 9 .3 -prior 0.5 to mri_ca_label, and -lta to mri_cc, per natalia zaretskaya |
view |
| 255 |
2015-02-26 16:38:13 |
20082 |
to previous |
NickSchmansky |
updated file list used in wmparc stats stage by mri_segstats, which reads a bunch of files not listed on the commandline |
view |
| 254 |
2015-02-26 15:24:21 |
19993 |
to previous |
NickSchmansky |
updated file list used in aseg stats stage by mri_segstats, which reads a bunch of files not listed on the commandline |
view |
| 253 |
2015-02-16 17:55:21 |
19914 |
to previous |
NickSchmansky |
added -orig_white white to pial stage mris_make _surfaces command |
view |
| 252 |
2015-02-16 13:11:52 |
19896 |
to previous |
NickSchmansky |
added -orig_pial white and -fix_mtl to pial stage mris_make _surfaces command |
view |
| 251 |
2015-01-24 12:24:36 |
19870 |
to previous |
NickSchmansky |
cortparc stage must run before parcstats so that ribbon.mgz is available |
view |
| 250 |
2015-01-22 14:31:15 |
19834 |
to previous |
NickSchmansky |
fixed missing -aseg ../mri/aseg.presurf |
view |
| 249 |
2015-01-12 21:06:00 |
19782 |
to previous |
NickSchmansky |
|
view |
| 248 |
2015-01-12 21:04:46 |
19810 |
to previous |
NickSchmansky |
|
view |
| 247 |
2014-12-17 20:48:36 |
19806 |
to previous |
NickSchmansky |
|
view |
| 246 |
2014-12-16 15:00:58 |
19812 |
to previous |
NickSchmansky |
|
view |
| 245 |
2014-12-15 14:50:26 |
19812 |
to previous |
NickSchmansky |
|
view |
| 244 |
2014-11-07 20:13:03 |
19798 |
to previous |
NickSchmansky |
parcstats depends on wm.mz, ?h.white, ?h.pial and ?h.thickness |
view |
| 243 |
2014-11-06 15:58:22 |
19451 |
to previous |
NickSchmansky |
|
view |
| 242 |
2014-11-06 15:57:33 |
19455 |
to previous |
NickSchmansky |
|
view |
| 241 |
2014-11-06 15:42:16 |
19451 |
to previous |
NickSchmansky |
|
view |
| 240 |
2014-11-06 15:40:10 |
19463 |
to previous |
NickSchmansky |
|
view |
| 239 |
2014-11-06 15:37:40 |
19275 |
to previous |
NickSchmansky |
|
view |
| 238 |
2014-11-06 15:35:02 |
19456 |
to previous |
NickSchmansky |
|
view |
| 237 |
2014-11-06 15:21:21 |
18680 |
to previous |
NickSchmansky |
|
view |
| 236 |
2014-11-06 15:10:25 |
18569 |
to previous |
NickSchmansky |
|
view |
| 235 |
2014-11-06 15:08:59 |
18583 |
to previous |
NickSchmansky |
|
view |
| 234 |
2014-11-06 15:02:14 |
18157 |
to previous |
NickSchmansky |
|
view |
| 233 |
2014-11-06 14:56:28 |
18166 |
to previous |
NickSchmansky |
|
view |
| 232 |
2014-11-06 14:44:25 |
18166 |
to previous |
NickSchmansky |
|
view |
| 231 |
2014-11-06 14:42:12 |
18168 |
to previous |
NickSchmansky |
|
view |
| 230 |
2014-11-06 14:40:07 |
18056 |
to previous |
NickSchmansky |
|
view |
| 229 |
2014-11-06 14:27:52 |
18050 |
to previous |
NickSchmansky |
|
view |
| 228 |
2014-11-06 14:14:23 |
18128 |
to previous |
NickSchmansky |
|
view |
| 227 |
2014-11-06 14:00:21 |
18128 |
to previous |
NickSchmansky |
|
view |
| 226 |
2014-11-06 13:51:59 |
18167 |
to previous |
NickSchmansky |
|
view |
| 225 |
2014-11-06 13:46:58 |
17991 |
to previous |
NickSchmansky |
|
view |
| 224 |
2014-11-06 13:37:14 |
18701 |
to previous |
NickSchmansky |
|
view |
| 223 |
2014-11-06 01:32:48 |
18651 |
to previous |
NickSchmansky |
|
view |
| 222 |
2014-11-06 01:00:27 |
18420 |
to previous |
NickSchmansky |
|
view |
| 221 |
2014-11-06 00:55:01 |
18291 |
to previous |
NickSchmansky |
|
view |
| 220 |
2014-11-05 22:49:58 |
18031 |
to previous |
NickSchmansky |
|
view |
| 219 |
2014-11-05 22:39:55 |
17945 |
to previous |
NickSchmansky |
|
view |
| 218 |
2014-11-05 18:12:57 |
17762 |
to previous |
NickSchmansky |
|
view |
| 217 |
2014-11-05 18:09:36 |
17599 |
to previous |
NickSchmansky |
|
view |
| 216 |
2014-11-05 18:08:44 |
17634 |
to previous |
NickSchmansky |
|
view |
| 215 |
2014-11-05 17:57:41 |
17913 |
to previous |
NickSchmansky |
|
view |
| 214 |
2014-11-04 22:16:07 |
17370 |
to previous |
NickSchmansky |
|
view |
| 213 |
2014-11-04 22:15:42 |
17371 |
to previous |
NickSchmansky |
|
view |
| 212 |
2014-11-04 21:18:24 |
17334 |
to previous |
NickSchmansky |
|
view |
| 211 |
2014-11-04 21:17:39 |
17329 |
to previous |
NickSchmansky |
|
view |
| 210 |
2014-11-03 22:26:44 |
17325 |
to previous |
NickSchmansky |
added -hyporelabel stage |
view |
| 209 |
2014-10-31 19:27:03 |
17031 |
to previous |
NickSchmansky |
|
view |
| 208 |
2014-10-31 18:39:55 |
16637 |
to previous |
NickSchmansky |
|
view |
| 207 |
2014-10-31 18:36:29 |
16477 |
to previous |
NickSchmansky |
|
view |
| 206 |
2014-10-31 18:34:51 |
16407 |
to previous |
NickSchmansky |
|
view |
| 205 |
2014-10-31 18:33:23 |
16069 |
to previous |
NickSchmansky |
|
view |
| 204 |
2014-10-31 18:29:10 |
15969 |
to previous |
NickSchmansky |
|
view |
| 203 |
2014-10-31 18:27:26 |
15936 |
to previous |
NickSchmansky |
|
view |
| 202 |
2014-10-31 17:59:55 |
15574 |
to previous |
NickSchmansky |
|
view |
| 201 |
2014-10-31 17:51:22 |
15491 |
to previous |
NickSchmansky |
|
view |
| 200 |
2014-10-31 17:38:47 |
15655 |
to previous |
NickSchmansky |
|
view |
| 199 |
2014-10-20 20:51:42 |
15737 |
to previous |
NickSchmansky |
|
view |
| 198 |
2014-10-20 20:46:57 |
15751 |
to previous |
NickSchmansky |
|
view |
| 197 |
2014-09-23 18:15:07 |
15751 |
to previous |
NickSchmansky |
added -apas2aseg stage (creation of aseg+.mgz, which is aseg.mgz with gm corrected by surfaces) |
view |
| 196 |
2014-09-18 15:17:34 |
15573 |
to previous |
NickSchmansky |
|
view |
| 195 |
2014-09-18 12:20:29 |
15476 |
to previous |
NickSchmansky |
new subcortical atlas: RB_all_2014_08_21.gca |
view |
| 194 |
2014-09-18 12:18:11 |
15476 |
to previous |
NickSchmansky |
nu.mgz is now created after brainmask.mgz (skullstrip stage), as nu works best if brain is masked |
view |
| 193 |
2014-09-17 16:41:43 |
15440 |
to previous |
NickSchmansky |
|
view |
| 192 |
2014-01-09 13:52:18 |
15085 |
to previous |
MaritzaEbling |
|
view |
| 191 |
2014-01-09 11:22:37 |
15087 |
to previous |
MaritzaEbling |
|
view |
| 190 |
2013-12-11 18:02:35 |
14125 |
to previous |
MaritzaEbling |
|
view |
| 189 |
2013-12-11 11:29:43 |
14129 |
to previous |
MaritzaEbling |
|
view |
| 188 |
2013-08-30 15:42:24 |
14214 |
to previous |
AllisonStevens |
|
view |
| 187 |
2013-07-15 12:57:06 |
14157 |
to previous |
LouisVinke |
|
view |
| 186 |
2012-03-26 16:48:17 |
14139 |
to previous |
NickSchmansky |
|
view |
| 185 |
2012-03-26 16:48:05 |
14175 |
to previous |
NickSchmansky |
|
view |
| 184 |
2011-12-06 17:20:38 |
14177 |
to previous |
AllisonStevens |
|
view |
| 183 |
2011-08-17 17:17:29 |
14141 |
to previous |
NickSchmansky |
|
view |
| 182 |
2011-03-22 10:20:26 |
14137 |
to previous |
KhoaNguyen |
|
view |
| 181 |
2011-03-22 10:19:40 |
14137 |
to previous |
KhoaNguyen |
|
view |
| 180 |
2011-03-22 10:18:56 |
14140 |
to previous |
KhoaNguyen |
|
view |
| 179 |
2011-03-22 10:14:53 |
14340 |
to previous |
KhoaNguyen |
|
view |
| 178 |
2011-03-22 10:14:03 |
14111 |
to previous |
KhoaNguyen |
|
view |
| 177 |
2011-03-22 10:11:12 |
14141 |
to previous |
KhoaNguyen |
|
view |
| 176 |
2011-03-22 10:07:46 |
14343 |
to previous |
KhoaNguyen |
|
view |
| 175 |
2011-03-22 10:06:18 |
14134 |
to previous |
KhoaNguyen |
|
view |
| 174 |
2011-03-22 10:05:39 |
14137 |
to previous |
KhoaNguyen |
|
view |
| 173 |
2011-03-22 10:04:29 |
14140 |
to previous |
KhoaNguyen |
|
view |
| 172 |
2010-12-17 14:42:37 |
14341 |
to previous |
NickSchmansky |
|
view |
| 171 |
2010-12-17 14:41:09 |
14296 |
to previous |
NickSchmansky |
|
view |
| 170 |
2010-12-14 14:18:18 |
14251 |
to previous |
NickSchmansky |
|
view |
| 169 |
2010-12-14 14:17:32 |
14231 |
to previous |
NickSchmansky |
added --uchar transforms/talairach.xfm to mri_nu_correct.mni |
view |
| 168 |
2010-12-09 16:00:42 |
14184 |
to previous |
NickSchmansky |
talairach stage now run before nu_correct stage, and now uses orig.mgz as input instead of nu.mgz |
view |
| 167 |
2010-12-07 15:05:57 |
14180 |
to previous |
NickSchmansky |
|
view |
| 166 |
2010-12-07 15:05:30 |
14176 |
to previous |
NickSchmansky |
|
view |
| 165 |
2010-12-07 15:04:11 |
14176 |
to previous |
NickSchmansky |
|
view |
| 164 |
2010-12-07 14:59:52 |
14163 |
to previous |
NickSchmansky |
changed -nowrite to -white NOWRITE in -pial stage |
view |
| 163 |
2010-11-04 13:02:43 |
14157 |
to previous |
NickSchmansky |
|
view |
| 162 |
2010-11-04 13:01:22 |
14157 |
to previous |
NickSchmansky |
|
view |
| 161 |
2010-11-04 11:28:30 |
14145 |
to previous |
NickSchmansky |
moved -surfvolume stage to after -pial |
view |
| 160 |
2010-11-03 12:46:44 |
14145 |
to previous |
NickSchmansky |
added -pial stage |
view |
| 159 |
2010-11-03 12:10:36 |
13805 |
to previous |
NickSchmansky |
changed -finalsurfs stage to -white (pial and thickness now created in -pial stage) |
view |
| 158 |
2010-11-03 11:59:27 |
13805 |
to previous |
NickSchmansky |
|
view |
| 157 |
2010-11-02 11:32:35 |
13851 |
to previous |
NickSchmansky |
added -balabels and -label-exvivo-ec stages |
view |
| 156 |
2010-11-02 10:47:59 |
13717 |
to previous |
NickSchmansky |
|
view |
| 155 |
2010-10-27 13:03:25 |
13703 |
to previous |
NickSchmansky |
|
view |
| 154 |
2010-10-27 12:29:58 |
13693 |
to previous |
NickSchmansky |
added wm.mgz and filled.mgz as inputs to mris_make_surfaces (they are read-in implicitly) |
view |
| 153 |
2010-07-13 13:05:10 |
13673 |
to previous |
NickSchmansky |
|
view |
| 152 |
2010-05-07 10:42:50 |
13608 |
to previous |
NickSchmansky |
fixed incorrect atlas, was RB_2007_08_08, should be RB_2008_03_26 |
view |
| 151 |
2010-04-08 02:25:23 |
13608 |
to previous |
NickSchmansky |
|
view |
| 150 |
2010-04-05 17:11:14 |
13608 |
to previous |
NickSchmansky |
update mri_segstats command line |
view |
| 149 |
2010-04-05 17:07:37 |
13584 |
to previous |
NickSchmansky |
segstats now is after cortribbon |
view |
| 148 |
2010-02-19 18:08:47 |
13584 |
to previous |
NickSchmansky |
added mri_gcut stage to -skullstrip |
view |
| 147 |
2010-02-19 17:57:37 |
13373 |
to previous |
NickSchmansky |
|
view |
| 146 |
2010-02-19 17:53:49 |
13371 |
to previous |
NickSchmansky |
removed colors |
view |
| 145 |
2010-02-19 17:47:26 |
14825 |
to previous |
NickSchmansky |
removed colors |
view |
| 144 |
2010-02-19 17:21:31 |
16495 |
to previous |
NickSchmansky |
|
view |
| 143 |
2009-10-05 19:39:12 |
16193 |
to previous |
NickSchmansky |
moved mri_segstats from autorecon2 to autorecon3 |
view |
| 142 |
2009-09-25 15:00:50 |
16193 |
to previous |
NickSchmansky |
mris_volmask takes aseg.mgz as input, not orig.mgz |
view |
| 141 |
2009-07-29 21:32:48 |
16193 |
to previous |
NickSchmansky |
moved -cortribbon to -autorecon3 to match what is actually done; updated -cortparc2 to use new destrieux atlas |
view |
| 140 |
2009-06-03 17:13:31 |
16070 |
to previous |
MartinReuter |
|
view |
| 139 |
2009-06-03 16:53:34 |
16051 |
to previous |
MartinReuter |
|
view |
| 138 |
2009-06-03 15:59:56 |
16021 |
to previous |
MartinReuter |
|
view |
| 137 |
2009-06-03 15:48:22 |
15893 |
to previous |
MartinReuter |
|
view |
| 136 |
2009-06-03 15:43:30 |
15877 |
to previous |
MartinReuter |
|
view |
| 135 |
2009-03-03 23:00:19 |
15873 |
to previous |
NickSchmansky |
|
view |
| 134 |
2009-02-24 17:35:43 |
15861 |
to previous |
KrishSubramaniam |
mris_calc mistakes pointed out by Martin |
view |
| 133 |
2008-11-23 23:22:45 |
15858 |
to previous |
KrishSubramaniam |
correct dir of wmparc.stats |
view |
| 132 |
2008-04-29 11:45:04 |
15852 |
to previous |
localhost |
converted to 1.6 markup |
view |
| 131 |
2008-02-28 15:09:00 |
15868 |
to previous |
NickSchmansky |
mri_fill uses aseg.auto_noCCseg.mgz as input |
view |
| 130 |
2008-02-26 19:05:02 |
15849 |
to previous |
NickSchmansky |
eliminated -ccseg flag |
view |
| 129 |
2008-02-11 16:51:45 |
15974 |
to previous |
AllisonStevens |
|
view |
| 128 |
2008-02-11 16:50:21 |
15960 |
to previous |
AllisonStevens |
|
view |
| 127 |
2008-02-11 16:49:38 |
15954 |
to previous |
AllisonStevens |
|
view |
| 126 |
2008-02-11 16:49:12 |
15954 |
to previous |
AllisonStevens |
|
view |
| 125 |
2008-02-11 16:48:40 |
15946 |
to previous |
AllisonStevens |
|
view |
| 124 |
2008-02-11 16:47:12 |
15940 |
to previous |
AllisonStevens |
|
view |
| 123 |
2008-02-11 16:46:20 |
15938 |
to previous |
AllisonStevens |
|
view |
| 122 |
2008-02-11 16:45:53 |
15932 |
to previous |
AllisonStevens |
|
view |
| 121 |
2008-02-11 16:45:05 |
15930 |
to previous |
AllisonStevens |
|
view |
| 120 |
2008-02-11 16:27:32 |
15623 |
to previous |
AllisonStevens |
|
view |
| 119 |
2008-02-11 15:49:40 |
15627 |
to previous |
AllisonStevens |
|
view |
| 118 |
2008-02-11 15:48:15 |
15631 |
to previous |
AllisonStevens |
|
view |
| 117 |
2008-02-11 14:25:43 |
15475 |
to previous |
AllisonStevens |
|
view |
| 116 |
2008-02-11 14:11:29 |
15475 |
to previous |
AllisonStevens |
|
view |
| 115 |
2008-02-07 18:38:23 |
15621 |
to previous |
NickSchmansky |
|
view |
| 114 |
2008-02-07 18:27:06 |
15490 |
to previous |
NickSchmansky |
|
view |
| 113 |
2008-02-07 18:23:02 |
15490 |
to previous |
NickSchmansky |
-normalize2 step takes aseg.mgz as input |
view |
| 112 |
2008-02-05 13:16:05 |
15454 |
to previous |
AllisonStevens |
|
view |
| 111 |
2008-02-05 13:12:15 |
15432 |
to previous |
AllisonStevens |
|
view |
| 110 |
2008-02-01 14:51:23 |
15226 |
to previous |
AllisonStevens |
|
view |
| 109 |
2008-02-01 14:49:34 |
15226 |
to previous |
AllisonStevens |
|
view |
| 108 |
2008-02-01 14:35:46 |
15000 |
to previous |
AllisonStevens |
|
view |
| 107 |
2008-02-01 14:35:03 |
14998 |
to previous |
AllisonStevens |
|
view |
| 106 |
2008-02-01 14:32:45 |
14994 |
to previous |
AllisonStevens |
|
view |
| 105 |
2008-01-29 15:07:48 |
14453 |
to previous |
AllisonStevens |
|
view |
| 104 |
2008-01-25 17:31:00 |
14463 |
to previous |
AllisonStevens |
|
view |
| 103 |
2008-01-23 15:08:48 |
14500 |
to previous |
AllisonStevens |
|
view |
| 102 |
2008-01-23 15:07:55 |
14483 |
to previous |
AllisonStevens |
|
view |
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2008-01-23 15:06:05 |
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2008-01-23 14:59:44 |
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2008-01-16 16:45:58 |
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2008-01-16 16:12:56 |
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2008-01-16 16:12:30 |
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2008-01-16 16:05:32 |
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2008-01-16 16:00:55 |
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2008-01-16 15:57:42 |
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2008-01-15 16:43:26 |
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2008-01-15 16:42:48 |
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2008-01-15 16:31:58 |
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2008-01-15 16:30:21 |
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2008-01-15 16:28:23 |
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2008-01-15 16:11:21 |
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2008-01-15 15:58:55 |
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2008-01-15 15:37:41 |
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