|
Size: 461
Comment:
|
Size: 1308
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 5: | Line 5: |
| * ReconAllFilesVsSteps * QaImageScripts Sample scripts to produce "screencaps" en masse for QA * ["mris_curvature_stats"] * ["mris_label2annot"] * LabelsClutsAnnotationFiles * ["mris_label2annot"] * ["mri_annotation2label"] |
||'''Link'''||'''Description'''|| ||ReconAllFilesVsSteps||Cross-reference table showing files read and written by each step in recon-all|| ||LabelsClutsAnnotationFiles||Article on labels, colortables and annotations || ||RegTemplateParcAtlas||Creating and using "tif" templates for spherical registration of surfaces and GCA atlas files for parcellation|| || RegTemplateParcAtlas/TemplateCreate||Creating a template for spherical registration (mris_make_template)|| || RegTemplateParcAtlas/TemplateUse||Using a template (mris_register)|| || RegTemplateParcAtlas/AtlasCreate||Creating an atlas for parcellation (mris_ca_train) || || RegTemplateParcAtlas/AtlasUse||Parcellation by applying an atlas (mris_ca_label)|| || || || ||QaImageScripts||Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA || || || || ||'''Commands'''||(... for which I wrote some documentation) || ||["mris_curvature_stats"] || || ||["mris_label2annot"] || || ||["mri_annotation2label"]|| || ||["mris_make_template"]|| || ||["mri_make_template"]|| || || || || |
GrahamWideman pages
Useful pages
Link |
Description |
Cross-reference table showing files read and written by each step in recon-all |
|
Article on labels, colortables and annotations |
|
Creating and using "tif" templates for spherical registration of surfaces and GCA atlas files for parcellation |
|
Creating a template for spherical registration (mris_make_template) |
|
Using a template (mris_register) |
|
Creating an atlas for parcellation (mris_ca_train) |
|
Parcellation by applying an atlas (mris_ca_label) |
|
|
|
Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA |
|
|
|
Commands |
(... for which I wrote some documentation) |
["mris_curvature_stats"] |
|
["mris_label2annot"] |
|
["mri_annotation2label"] |
|
["mris_make_template"] |
|
["mri_make_template"] |
|
|
|