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- FsTutorial/MorphAndRecon . . . 28 matches
- ...[[FsTutorial|top]]
= TUTORIAL LOCATION HAS MOVED =
The tutorial home page is now located [[FsTutorial|here]].
The information in the tutorial below is still valid, but the tutor...
- FsTutorial/Exercises . . . 25 matches
- ...[[FsTutorial|top]]
== Exercise Overview ==
Below are links to the tutorial exercises, extracted from the tutorial's supporting text. To follow these exercises exactly be sure yo...
- FsTutorial/TroubleshootingData_tktools . . . 17 matches
- ...
[[FsTutorial|top]] | [[FsTutorial/OutputData|previous]] | [[FsTutorial/LongitudinalTutorial|next]]
= Troubleshooting your output =
This set of exercises will take you through a ...
- FsTutorial/TroubleshootingData_New . . . 16 matches
- ...[[FsTutorial|top]] | [[FsTutorial/OutputData|previous]] | [[FsTutorial/LongitudinalTutorial|next]]
= Troubleshooting your output =
This set of exercises will take you through a few...
- HiResRecon . . . 17 matches
- ...5mm_downsampled
* This will be the name of your subject
* recon-all -motioncor -talairach -tal-check -i ~/data/ab11_05mm.nii -s $SUBJ
* Adjust the path to your input file...
- UserContributions/FAQ . . . 16 matches
- ...f -skullstrip. More info can be found here: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/SkullStripFix
=== Q. One or more of the files in a subject's directory was accident...
- HistoricalReconstruction . . . 11 matches
- ...l script:
'''`recon-all -stage1 -subjid `''your_subject_name'''''
7. Check the talairach transform:
7.1 Make sure the talairach subject is linked to `$SUBJECTS_DIR`
...
- BasicReconstruction . . . 11 matches
- ...this command. After the process finishes the user must check the final surfaces and talairach transform. Any manual intervention needed to fix problems that occurred during the ...