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=== 7:30 - 9:30am Registration Desk Open ===
==== Monday, September 28th - Introduction / Single Subject Analysis /Troubleshooting ====
=== 8:00 - 9:30am Registration Desk Open ===
==== Monday, September 28th - Introduction / Single Subject Analysis / Troubleshooting ====
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||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' '' ||talk ||Dylan Tisdall ||
||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial ||Allison Moreau ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||Allison Moreau ||
||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_bash.ppt|Unix Tutorial for FreeSurfer Users]] ||talk/tutorial ||Allison Moreau ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||Allison Moreau & Lilla Zollei ||
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||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl ||
||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve ||
||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl ||
||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Bruce Fischl ||
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||11:30 - 12:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk ||Doug Greve ||
||12:10 - 1:10 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|(Suggestions for where to eat)]] ||-- ||-- ||
||1:10 - 1:30 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Allison Moreau ||
||1:30 - 2:30 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||
||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Bruce Fischl ||
||3:00 - 3:20 ||'''break''' || || ||
||3:20 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo ||Allison Stevens ||
||4:00 - 5:00 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
||5:00 - 5:15 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff ||
||11:30 - 11:45 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Lee Tirrell ||
||11:45 - 12:00 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||
||12:00 - 1:00 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|(Suggestions for where to eat)]] ||-- ||-- ||
||1:00 - 1:45 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||
||1:45 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Bruce Fischl ||
||2:15 - 2:35 ||'''break''' || || ||
||2:35 - 3:35 ||Quality Checking a Recon ||demo ||Ani Varjabedian ||
||3:35 - 4:35 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
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'''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<<BR>> Meet us in front of [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Map|Building 149]] to catch the 6:15pm shuttle bus (it leaves on time!). <<BR>> If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. Boston Beer Works will be down that street, on your right. (If you miss the 6:15 bus, the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm). Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]
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==== Tuesday, September 29th - Group Analysis / ROI Analysis / Longitudinal / fMRI ==== ==== Tuesday, September 29th - Group Analysis / Longitudinal Analysis / ROI Analysis ====
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||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Anastasia Yendiki ||
||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.groupanalysis.pdf|Group Analysis]] ||talk ||Emily Lindemer ||
||10:20 - 10:40 ||'''break''' || ||
||10:40 - 11:20 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||
||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk ||Martin Reuter ||
||11:40 - 12:00 ||QDEC demonstration ||demo ||Martin Reuter ||
||9:00 - 9:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Sep_2015_MRI_Basics.pdf|A Non-physicist's Intro to MR]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' '' ||talk ||Dylan Tisdall ||
||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Registration & Smoothing]] ||talk ||Lilla Zollei ||
||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis]] ||talk ||Emily Lindemer ||
||10:40 - 11:00 ||'''break''' || ||
||11:00 - 11:40 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||
||11:40 - 12:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Emily Lindemer ||
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||1:20 - 2:00 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve ||
||2:30 - 2:50 ||'''break''' || ||
||2:50 - 3:20 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:20 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Martin Reuter ||
||3:50 - 4:30 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
||4:30 - 5:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis]] ||talk ||Jon Polimeni ||
||5:30 - 5:45 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff ||
||1:20 - 1:40 ||QDEC demonstration ||demo ||Martin Reuter ||
||1:40 - 2:20 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||2:20 - 2:40 ||'''break''' || ||
||2:40 - 3:25 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Martin Reuter ||
||3:25 - 4:05 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||
||4:05 - 4:20 ||'''break''' || ||
||4:20 - 4:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Martin Reuter ||
||4:50 - 5:20 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||6:15 - ? ||Boston Beer Works ||social activity ||staff ||
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==== Wednesday, September 30th - fMRI / Multimodal / Diffusion / Future Directions / Q&A ==== Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]

'''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<<BR>> Meet us in front of [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Map|Building 149]] to catch the 6:15pm shuttle bus (it leaves on time!). <<BR>> If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. <<BR>>Boston Beer Works will be down that street, on your right. (Shuttles depart every 15 minutes up until 7:15pm and every half hour after that).

==== Wednesday, September 30th - Multimodal Analysis / fMRI / Diffusion ====
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||8:30 - 9:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.dti.ppt|Multi-Modal Integration, Part 1]] ||talk ||Doug Greve ||
||9:00 - 9:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk ||Doug Greve ||
||9:45 - 10:00 ||'''break''' || ||
||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk ||Doug Greve ||
||10:40 - 11:40 ||[[FsFastTutorialV5.1_freeview|FSFAST Tutorial]] ||tutorial ||staff ||
||11:40 - 12:40 ||'''Lunch''' ||-- ||-- ||
||12:40 - 1:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.multimodal-integration.ppt|Multi-Modal Integration, Part 2]] ||talk ||Lilla Zollei ||
||1:10 - 2:25 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
||2:25 - 2:45 ||'''break''' & Evaluation || ||
||2:45 - 3:35 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonOct2014/tracula,fs,10.29.14.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki ||
||3:35 - 4:20 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||4:20 - 4:50 ||Future Directions ||talk ||TBD ||
||4:50 - 5:05 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part1.ppt|Multi-Modal Integration, Part 1]] ||talk ||Lilla Zollei ||
||9:30 - 10:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Anastasia Yendiki ||
||10:10 - 10:40 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||
||10:40 - 10:55 ||'''break''' || ||
||10:55 - 11:25 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki ||
||11:25 - 12:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||12:00 - 12:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|Longitudinal TRACULA]] ||talk ||Anastasia Yendiki ||
||12:15 - 1:15 ||'''Lunch''' ||-- ||-- ||
||1:15 - 1:45 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Sep_2015_Diffusion.pdf|A Non-Physicist's Intro to Diffusion MRI Physics]] '' '' ||talk ||Dylan Tisdall ||
||1:45 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis]] ||talk ||Jon Polimeni ||
||2:45 - 3:05 ||'''break''' & Evaluation || ||
||3:05 - 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk || Natalia Zaretskaya ||
||4:15 - 5:15 ||[[FsFastTutorialV5.1_freeview|FSFAST Tutorial]] ||tutorial ||staff ||
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Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]
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==== Thursday, October 1st - Technical talks ==== ==== Thursday, October 1st - Multimodal Analysis / MRI Acquisition Tips / Future Directions ====
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||9:00 - 9:30 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods]] ||talk ||Lilla Zollei ||
||9:30 - 10:30 ||More Quality Checking a Recon ||demo ||Allison Stevens ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part2.ppt|Multi-Modal Integration, Part 2]] ||talk ||Lilla Zollei ||
||9:30 - 10:30 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
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||10:50 - 11:20 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry]] ||talk ||Andre van der Kouwe ||
||11:20 - 11:50 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging]] ||talk ||Dylan Tisdall ||
||10:50 - 11:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|An Overview of Registration Methods]] ||talk ||Lilla Zollei ||
||11:20 - 11:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods]] ||talk ||Andre van der Kouwe ||
||11:50 - 12:50 ||'''Lunch''' ||-- ||-- ||
||12:50 - 1:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated Neuroanatomical Imaging]] ||talk ||Dylan Tisdall ||
||1:20 - 2:00 ||Future Directions ||talk ||Bruce Fischl ||
||2:00 - 2:30 ||Question & Answer session ||-- ||staff ||


Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]

FreeSurfer Course, September 28 - Oct 1

8:00 - 9:30am Registration Desk Open

Monday, September 28th - Introduction / Single Subject Analysis / Troubleshooting

Time

Title

Type

Lecturer

8:30 - 9:00

optional - Unix Tutorial for FreeSurfer Users

talk/tutorial

Allison Moreau

9:00 - 9:15

optional - Intro to FreeSurfer Jargon

talk

Allison Moreau & Lilla Zollei

9:15 - 9:30

break

9:30 - 10:00

Introduction to Freesurfer

talk

Bruce Fischl

10:00 - 11:10

Analyzing the Individual Subject

talk

Bruce Fischl

11:10 - 11:30

break

11:30 - 11:45

Freeview demonstration

demo

Lee Tirrell

11:45 - 12:00

Interaction with Individual Subject Data Tutorial

tutorial

staff

12:00 - 1:00

Lunch (Suggestions for where to eat)

--

--

1:00 - 1:45

Interaction with Individual Subject Data Tutorial

tutorial

staff

1:45 - 2:15

FreeSurfer Troubleshooting

talk

Bruce Fischl

2:15 - 2:35

break

2:35 - 3:35

Quality Checking a Recon

demo

Ani Varjabedian

3:35 - 4:35

Troubleshooting Tutorial

tutorial

staff

Answers to online questions here

Tuesday, September 29th - Group Analysis / Longitudinal Analysis / ROI Analysis

Time

Title

Type

Lecturer

9:00 - 9:30

optional - A Non-physicist's Intro to MR SpinBench

talk

Dylan Tisdall

9:30 - 10:00

Surface-based Analysis: Intersubject Registration & Smoothing

talk

Lilla Zollei

10:00 - 10:40

Group Analysis

talk

Emily Lindemer

10:40 - 11:00

break

11:00 - 11:40

Group Analysis Tutorial

tutorial

staff

11:40 - 12:00

Multiple Comparisons

talk

Emily Lindemer

12:00 - 1:00

Lunch

--

--

1:00 - 1:20

Multiple Comparisons Tutorial

tutorial

staff

1:20 - 1:40

QDEC demonstration

demo

Martin Reuter

1:40 - 2:20

QDEC Tutorial

tutorial

staff

2:20 - 2:40

break

2:40 - 3:25

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

3:25 - 4:05

Longitudinal Tutorial

tutorial

staff

4:05 - 4:20

break

4:20 - 4:50

ROI Analysis

talk

Martin Reuter

4:50 - 5:20

ROI Analysis Tutorial

tutorial

staff

6:15 - ?

Boston Beer Works

social activity

staff

Answers to online questions here

Boston Beer Works location information here and here.
Meet us in front of Building 149 to catch the 6:15pm shuttle bus (it leaves on time!).
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street.
Boston Beer Works will be down that street, on your right. (Shuttles depart every 15 minutes up until 7:15pm and every half hour after that).

Wednesday, September 30th - Multimodal Analysis / fMRI / Diffusion

Time

Title

Type

Lecturer

9:00 - 9:30

Multi-Modal Integration, Part 1

talk

Lilla Zollei

9:30 - 10:10

Introduction to Diffusion MRI

talk

Anastasia Yendiki

10:10 - 10:40

Diffusion Processing Tutorial

tutorial

staff

10:40 - 10:55

break

10:55 - 11:25

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

11:25 - 12:00

Tracula Tutorial

tutorial

staff

12:00 - 12:15

Longitudinal TRACULA

talk

Anastasia Yendiki

12:15 - 1:15

Lunch

--

--

1:15 - 1:45

optional - A Non-Physicist's Intro to Diffusion MRI Physics

talk

Dylan Tisdall

1:45 - 2:45

Basics of fMRI Analysis

talk

Jon Polimeni

2:45 - 3:05

break & Evaluation

3:05 - 4:15

FSFAST

talk

Natalia Zaretskaya

4:15 - 5:15

FSFAST Tutorial

tutorial

staff

Answers to online questions here

Thursday, October 1st - Multimodal Analysis / MRI Acquisition Tips / Future Directions

Time

Title

Type

Lecturer

9:00 - 9:30

Multi-Modal Integration, Part 2

talk

Lilla Zollei

9:30 - 10:30

Multi-Modal Integration Tutorial

tutorial

staff

10:30 - 10:50

break

10:50 - 11:20

An Overview of Registration Methods

talk

Lilla Zollei

11:20 - 11:50

MRI Acquisition Methods

talk

Andre van der Kouwe

11:50 - 12:50

Lunch

--

--

12:50 - 1:20

Motion-compensated Neuroanatomical Imaging

talk

Dylan Tisdall

1:20 - 2:00

Future Directions

talk

Bruce Fischl

2:00 - 2:30

Question & Answer session

--

staff

Answers to online questions here

FsTutorial/Sept2015CourseSchedule (last edited 2017-09-26 11:31:49 by MorganFogarty)