Diff for "FsTutorial/Sept2015CourseSchedule"

Differences between revisions 3 and 9 (spanning 6 versions)

FreeSurfer Course, September 28 - Oct 1

7:30 - 9:30am Registration Desk Open

Monday, September 28th - Introduction / Single Subject Analysis /Troubleshooting

Time	Title	Type	Lecturer
8:00 - 8:30	optional - A Non-physicist's Intro to MR SpinBench	talk	Dylan Tisdall
8:30 - 9:00	optional - Unix Tutorial for FreeSurfer Users	talk/tutorial	Allison Moreau
9:00 - 9:15	optional - Intro to FreeSurfer Jargon	talk	Allison Moreau & Lilla Zollei
9:15 - 9:30	break
9:30 - 10:00	Introduction to Freesurfer	talk	Bruce Fischl
10:00 - 11:10	Analyzing the Individual Subject	talk	Doug Greve
11:10 - 11:30	break
11:30 - 12:10	Surface-based Analysis: Intersubject Smoothing & Registration	talk	Doug Greve
12:10 - 1:10	Lunch (Suggestions for where to eat)	--	--
1:10 - 1:30	Freeview demonstration	demo	Lee Tirrell
1:30 - 2:30	Interaction with Individual Subject Data Tutorial	tutorial	staff
2:30 - 3:00	FreeSurfer Troubleshooting	talk	Bruce Fischl
3:00 - 3:20	break
3:20 - 4:00	Quality Checking a Recon	demo	Ani Varjabedian
4:00 - 5:00	Troubleshooting Tutorial	tutorial	staff
5:00 - 5:15	Question and Answer Session (Answers to online questions here)	talk	staff

Boston Beer Works location information here and here.
Meet us in front of Building 149 to catch the 6:15pm shuttle bus (it leaves on time!).
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. Boston Beer Works will be down that street, on your right. (If you miss the 6:15 bus, the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).

Tuesday, September 29th - Diffusion / Group Analysis / ROI Analysis / Longitudinal / fMRI

Time	Title	Type	Lecturer
9:00 - 9:40	Group Analysis	talk	Emily Lindemer
9:40 - 10:20	Group Analysis Tutorial	tutorial	staff
10:20 - 10:40	break
10:40 - 11:00	Multiple Comparisons	talk	Martin Reuter
11:00 - 11:20	QDEC demonstration	demo	Martin Reuter
11:20 - 11:40	Multiple Comparisons Tutorial	tutorial	staff
11:40 - 12:20	QDEC Tutorial	tutorial	staff
12:20 - 1:20	Lunch	--	--
1:20 - 1:50	ROI Analysis	talk	Doug Greve
1:50 - 2:20	ROI Analysis Tutorial	tutorial	staff
2:20 - 2:40	break
2:40 - 3:10	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
3:10 - 4:00	Longitudinal Tutorial	tutorial	staff
4:00 - 4:30	Multi-Modal Integration, Part 1	talk	Doug Greve
4:30 - 5:30	Basics of fMRI Analysis	talk	Jon Polimeni

Wednesday, September 30th - fMRI / Multimodal / Diffusion / Future Directions / Q&A

Time	Title	Type	Lecturer
8:30 - 9:15	FSFAST	talk	Doug Greve
9:15 - 9:30	break
9:30 - 10:10	FSFAST	talk	Doug Greve
10:10 - 11:10	FSFAST Tutorial	tutorial	staff
11:10 - 11:40	Multi-Modal Integration, Part 2	talk	Lilla Zollei
11:40 - 12:40	Lunch	--	--
12:40 - 1:55	Multi-Modal Integration Tutorial	tutorial	staff
1:55 - 2:35	Introduction to Diffusion MRI	talk	Anastasia Yendiki
2:35 - 2:55	break & Evaluation
2:55 - 3:45	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
3:45 - 4:30	Tracula Tutorial	tutorial	staff
4:30 - 5:00	Future Directions	talk	TBD
5:00 - 5:15	Question and Answer Session (Answers to online questions here), FsQuiz	talk	staff

Thursday, October 1st - Technical talks

Time	Title	Type	Lecturer
9:00 - 9:30	optional technical talk - Registration Methods	talk	Lilla Zollei
9:30 - 10:30	More Quality Checking a Recon	demo	Allison Stevens
10:30 - 10:50	break
10:50 - 11:20	optional technical talk - MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
11:20 - 11:50	optional technical talk - Motion-compensated neuroanatomical imaging	talk	Dylan Tisdall

FsTutorial/Sept2015CourseSchedule (last edited 2017-09-26 11:31:49 by MorganFogarty)

-  ⇤ ← Revision 3 as of 2015-02-12 13:14:04 → 
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+   ← Revision 9 as of 2015-07-28 12:58:52 → ⇥
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  Editor: AllisonStevens
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-Deletions are marked like this.
+Additions are marked like this.
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-'''!FreeSurfer Course, May 5-7, 2014'''
+'''!FreeSurfer Course, September 28 - Oct 1'''
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-=== 8:00 - 9:30am Registration Desk Open ===
==== Monday, May 5th - Introduction / Single Subject Analysis /Troubleshooting ====
+=== 7:30 - 9:30am Registration Desk Open ===
==== Monday, September 28th - Introduction / Single Subject Analysis /Troubleshooting ====
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-||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial ||Allison Moreau ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||Allison Moreau ||
+||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||talk/tutorial ||Allison Moreau ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk || Allison Moreau & Lilla Zollei ||
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-||1:10 - 1:30 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Allison Moreau ||
+||1:10 - 1:30 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Lee Tirrell ||
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-||3:20 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo ||Allison Stevens ||
+||3:20 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo ||Ani Varjabedian ||
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-##||5:00 - ||'''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] ||one-on-one || staff || ||
##||5:00 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]] ||one-on-one || staff ||      ||
-Line 30:
+Line 28:
-==== Tuesday, May 6th - Group Analysis / ROI Analysis / Longitudinal ====
+==== Tuesday, September 29th - Diffusion / Group Analysis / ROI Analysis / Longitudinal / fMRI ====
-Line 32:
+Line 30:
-||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Anastasia Yendiki ||
||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.groupanalysis.pdf|Group Analysis]] ||talk ||Emily Lindemer ||
+||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.groupanalysis.pdf|Group Analysis]] ||talk ||Emily Lindemer ||
||9:40 - 10:20 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||
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+Line 33:
-||10:40 - 11:20 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||
||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk ||Martin Reuter ||
||11:40 - 12:00 ||QDEC demonstration ||demo ||Martin Reuter ||
||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||
||1:00 - 1:20 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||
||1:20 - 2:00 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve ||
||2:30 - 2:50 ||'''break''' || ||
||2:50 - 3:20 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:20 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Martin Reuter ||
||3:50 - 4:30 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
+||10:40 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk ||Martin Reuter ||
||11:00 - 11:20 ||QDEC demonstration ||demo ||Martin Reuter ||
||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||
||11:40 - 12:20 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||12:20 - 1:20 ||'''Lunch''' ||-- ||-- ||
||1:20 - 1:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve ||
||1:50 - 2:20 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||2:20 - 2:40 ||'''break''' || ||
||2:40 - 3:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Martin Reuter ||
||3:10 - 4:00 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
||4:00 - 4:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.dti.ppt|Multi-Modal Integration, Part 1]] ||talk ||Doug Greve ||
-Line 47:
+Line 45:
-||5:30 - 5:45 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff ||
-Line 50:
+Line 47:
-==== Wednesday, May 7th - fMRI / Multimodal /  Future Directions / Q&A ====
+==== Wednesday, September 30th - fMRI / Multimodal /  Diffusion / Future Directions / Q&A ====
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+Line 50:
-||8:30 - 9:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.dti.ppt|Multi-Modal Integration, Part 1]] ||talk ||Doug Greve ||
||9:00 - 9:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk ||Doug Greve ||
||9:45 - 10:00 ||'''break''' || ||
||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk ||Doug Greve ||
||10:40 - 11:40 ||[[FsFastTutorialV5.1_freeview|FSFAST Tutorial]] ||tutorial ||staff ||
+||8:30 - 9:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk ||Doug Greve ||
||9:15 - 9:30 ||'''break''' || ||
||9:30 - 10:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk ||Doug Greve ||
||10:10 - 11:10 ||[[FsFastTutorialV5.1_freeview|FSFAST Tutorial]] ||tutorial ||staff ||
||11:10 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.multimodal-integration.ppt|Multi-Modal Integration, Part 2]] ||talk ||Lilla Zollei ||
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-||12:40 - 1:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.multimodal-integration.ppt|Multi-Modal Integration, Part 2]] ||talk ||Lilla Zollei ||
||1:10 - 2:25 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
||2:25 - 2:45 ||'''break''' & Evaluation || ||
||2:45 - 3:35 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonOct2014/tracula,fs,10.29.14.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki ||
||3:35 - 4:20 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||4:20 - 4:50 ||Future Directions ||talk ||TBD ||
||4:50 - 5:05 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff ||
+||12:40 - 1:55 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
||1:55 - 2:35 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Anastasia Yendiki ||
||2:35 - 2:55 ||'''break''' & Evaluation || ||
||2:55 - 3:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonOct2014/tracula,fs,10.29.14.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki ||
||3:45 - 4:30 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||4:30 - 5:00 ||Future Directions ||talk ||TBD ||
||5:00 - 5:15 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff ||
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-==== Day 4 ====
+==== Thursday, October 1st - Technical talks ====