Differences between revisions 1 and 2
⇤ ← Revision 1 as of 2006-05-04 14:19:40 →
Size: 523
Editor: JenniPacheco
Comment:
← Revision 2 as of 2006-05-04 14:20:51 → ⇥
Size: 628
Editor: JenniPacheco
Comment:
Deletions are marked like this. Additions are marked like this.
Line 5: Line 5:
In this exercise you will be able to visualize and inspect a good output so that you can become familiar with what the end product should look like.  Output volumes will be looked at in tkmedit, with surfaces In this exercise you will be able to visualize and inspect a good output so that you can become familiar with what the end product should look like.

First you need to set your SUBJECTS_DIR to the appropriate place:
{{{
cd $FREESURFER_HOME/subjects/buckner_data/tutorial_subjs
setenv SUBJECTS_DIR ${PWD}
}}}
  • To follow this exercise exactly be sure you've downloaded the tutorial data set before you begin. If you choose not to download the data set you can follow these instructions on your own data, but you will have to substitute your own specific paths and subject names.

Inspection of Freesurfer Output

In this exercise you will be able to visualize and inspect a good output so that you can become familiar with what the end product should look like.

First you need to set your SUBJECTS_DIR to the appropriate place: 

cd $FREESURFER_HOME/subjects/buckner_data/tutorial_subjs
setenv SUBJECTS_DIR ${PWD}

FsTutorial/OutputData_tktools (last edited 2013-11-01 14:23:49 by MaritzaEbling)