Diff for "FsTutorial/MultiModal2016CourseSchedule"

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Multimodal Short Course, FreeSurfer/FS-FAST, May 2 & 3, 2016

MGH- Charlestown Navy Yard

Multi Modal Short Course

Monday, May 2 - Single Subject Analysis / Surface-based Smoothing and Registration / Group Analysis / Troubleshooting

Time	Title	Type	Lecturer
9:00 - 9:30	Introduction to Freesurfer	talk	Doug Greve
9:30 - 10:40	Analyzing the Individual Subject	talk	Doug Greve
10:40 - 11:00	break
11:00 - 11:20	Freeview demonstration	demo	Allison Moreau
11:20 - 12:20	Inspection of Freesurfer Output	tutorial	staff
12:20 - 1:20	lunch
1:20 - 1:50	Surface-based Smoothing/Surface-based Registration	talk	Doug Greve
1:50 - 2:20	Troubleshooting	talk	Allison Moreau
2:20 - 2:50	Troubleshooting Tutorial	tutorial	staff
2:50 - 3:10	break
3:10 - 3:50	Group Analysis / GLM	talk	Martin Reuter
3:50 - 4:35	Group Analysis - mri_glmfit	tutorial	staff
4:35 - 4:55	Multiple Comparisons	talk	Martin Reuter
4:55 - 5:15	QDEC demonstration	demo	Martin Reuter
5:15 - 6:00	Group Analysis - qdec	tutorial	staff

Tuesday, May 3 - FS-FAST

Time	Title	Type	Lecturer
2:00 - 3:15	Basics of fMRI Analysis	talk	Doug Greve
3:15 - 4:00	Functional Analysis with FS-FAST	talk	Doug Greve
4:00 - 4:15	break
4:15 - 5:00	Functional Analysis with FS-FAST, continued	talk	Doug Greve
5:00 - 6:00	FS-FAST Tutorial	tutorial	staff

Additional Useful Information

During the Course

Getting the tutorial data (necessary only if you are not taking a formal course where data is provided) DO NOT attempt this during a course! Contact a staff member for instructions on how to get this data locally during the course.
Using a Mac & need a text editor? Download gedit, here.
Scripts & aliases
Glossary

After the Course

Home page: http://surfer.nmr.mgh.harvard.edu
Publications
Mailing list: send mail to majordomo@surfer.nmr.mgh.harvard.edu with the following command in the body of your email message: subscribe freesurfer
How to cite FreeSurfer is on the FreeSurferMethodsCitation page.
System Requirements for Installation
iSurf - iPhone/iPad app to view FreeSurfer segmentations

Acknowledgements

FsTutorial/MultiModal2016CourseSchedule (last edited 2016-04-27 14:51:36 by AllisonStevens)

-  ⇤ ← Revision 1 as of 2016-04-26 15:47:48 → 
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+   ← Revision 5 as of 2016-04-26 16:23:52 → ⇥
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-Deletions are marked like this.
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-=== Monday, May 2 - Introduction / Single Subject / Troubleshooting ===
+=== Monday, May 2 - Single Subject Analysis / Surface-based Smoothing and Registration / Group Analysis / Troubleshooting ===
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-||1:20 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration]] ||talk ||Doug Greve ||
||2:00 - 2:20 ||'''break''' || || ||
||2:20 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/freesurfer.groupanalysis.ppt|Group Analysis / GLM]] ||talk ||Martin Reuter ||
||3:00 - 3:45 ||[[FsTutorial/GroupAnalysis|Group Analysis - mri_glmfit]] ||tutorial ||staff ||
||3:45 - 4:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/freesurfer.multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Martin Reuter ||
||4:05 - 4:25 ||QDEC demonstration ||demo ||Martin Reuter ||
||4:25 - 5:10 ||[[FsTutorial/QdecGroupAnalysis_freeview|Group Analysis - qdec]] ||tutorial ||staff ||

||3:20 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve ||
||3:50 - 4:40 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
+||1:20 - 1:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration]] ||talk ||Doug Greve ||
||1:50 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/freesurfer_failuremodes_ALM.ppt|Troubleshooting]] ||talk ||Allison Moreau ||
||2:20 - 2:50 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
||2:50 - 3:10 ||'''break''' || || ||
||3:10 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/freesurfer.groupanalysis.ppt|Group Analysis / GLM]] ||talk ||Martin Reuter ||
||3:50 - 4:35 ||[[FsTutorial/GroupAnalysis|Group Analysis - mri_glmfit]] ||tutorial ||staff ||
||4:35 - 4:55 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/freesurfer.multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Martin Reuter ||
||4:55 - 5:15 ||QDEC demonstration ||demo ||Martin Reuter ||
||5:15 - 6:00 ||[[FsTutorial/QdecGroupAnalysis_freeview|Group Analysis - qdec]] ||tutorial ||staff ||
-Line 26:
+Line 25:
-=== Tuesday, May 3 - Surface-based Smoothing and Registration / Group Analysis / FS-FAST ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
-Line 30:
+Line 27:
-||10:20 - 10:35 ||'''break''' || || ||


||12:45 - 2:00 ||'''lunch''' || || ||
+=== Tuesday, May 3 - FS-FAST ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
-Line 40:
+Line 35:
-||5:00 - 5:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/freesurfer_failuremodes_ALM.ppt|Troubleshooting]] ||talk ||Allison Moreau ||
||5:30 - 6:00 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||