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If you're attending the FreeSurfer course, you have the option to follow my step-by-step instructions or mirror my screen by clicking on this link. If you are not attending the FreeSurfer course, feel free to run the commands below and follow along with a recording of the demo we've uploaded to YouTube.

Copy and paste the commands below to get started:

export SUBJECTS_DIR=$TUTORIAL_DATA/buckner_data/tutorial_subjs
cd $SUBJECTS_DIR

To copy: Highlight the command in the box above, right click and select copy (or use keyboard shortcut Ctrl+c), then use the middle button of your mouse to click inside the terminal window (this will paste the command). Press enter to run the command.

If you would like to follow along for the freeview demo, copy and paste this into the terminal:

freeview -v \
good_output/mri/T1.mgz \
good_output/mri/brainmask.mgz \
good_output/mri/wm.mgz:visible=0 \
-f good_output/surf/lh.white:edgecolor=blue \
good_output/surf/rh.white:edgecolor=blue \
good_output/surf/rh.pial:edgecolor=red \
good_output/surf/lh.pial:edgecolor=red \
good_output/surf/rh.inflated:visible=0 \
good_output/surf/lh.inflated:visible=0 \
-viewport cor -layout 1

freeview -f  good_output/surf/lh.pial:annot=aparc.annot:name=pial_aparc:visible=0 \
good_output/surf/lh.pial:annot=aparc.a2009s.annot:name=pial_aparc_des:visible=0 \
good_output/surf/lh.inflated:overlay=lh.thickness:overlay_threshold=0.1,3::name=inflated_thickness:visible=0 \
good_output/surf/lh.inflated:visible=0 \
good_output/surf/lh.white:visible=0 \
good_output/surf/lh.pial \
--viewport 3d

Take a look at the new features and improvements in Freeview 6!