Diff for "FsTutorial/Feb2011CourseSchedule"

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FreeSurfer Course, April 4 and 5, 2010

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, October 4th - Introduction / Single Subject / ROIs /Group Analysis

Time	Title	Type	Lecturer
8:00 - 8:30	optional - Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly	tutorial	Allison Stevens
8:30 - 9:00	optional - Intro to FreeSurfer Jargon	talk	Allison Stevens
8:30 - 9:00	Course Registration	sign-in	staff
9:00 - 9:30	Introduction to Freesurfer	talk	Bruce Fischl
9:30 - 10:30	Analyzing the Individual Subject	talk	Doug Greve
10:30 - 10:45	break
10:45 - 11:15	Tkmedit/Tksurfer demonstration	demo	Doug Greve
11:15 - 11:45	Interaction with Individual Subject Data Tutorial	tutorial	staff
11:45 - 12:15	Surface-based Smoothing/Surface-based Registration	talk	Doug Greve
12:15 - 1:15	Lunch	--	--
12:30 - 1:00	Optional Lunch Talk- FreeSurfer Applications	talk	David Salat
1:15 - 1:45	Intro to MR	talk	Dylan Tisdall
1:45 - 2:30	MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
2:30 - 2:45	break
2:45 - 3:15	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
3:15 - 3:45	Failure Modes	talk	Bruce Fischl
3:45 - 4:45	Troubleshooting Demonstration, Troubleshooting Tutorial	tutorial	staff, Allison
4:45 - 5:30	Quality Checking a Recon	demo	Allison Stevens
5:30 -	optional - FreeSurfer Installation on Personal Laptops	one-on-one	Nick Schmansky
5:30 -	optional - Start Processing Your Own Data	one-on-one	Allison Stevens

Tuesday, October 5th - Troubleshooting / Multi-Modal / Q&A / Future Directions

Time	Title	Type	Lecturer
9:00 - 10:00	Group Analysis / GLM / Multiple Comparisons	talk	Mert Sabuncu
10:00 - 11:00	Group Analysis / Multiple Comparisons - mri_glmfit Tutorial	tutorial	staff
11:00 - 11:15	break
11:15 - 11:45	QDEC demonstration	demo	Nick Schmansky
11:45 - 12:30	Group Analysis - qdec Tutorial	tutorial	staff
12:30 - 1:30	Lunch	--	--
12:45 - 1:15	Optional Lunch Talk- Which What to Register	talk	Lilla Zollei
1:30 - 2:30	ROI Analysis	talk	Doug Greve
2:30 - 3:00	ROI Analysis Tutorial	tutorial	staff
3:00 - 3:30	Combined Volume and Surface Registration	talk	Lilla Zollei
3:30 - 3:45	break
3:45 - 4:15	Introduction to Diffusion Processing	talk	Lilla Zollei
4:15 - 5:15	Diffusion Tutorial	tutorial	staff
5:15 - 5:35	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
5:35 -	optional - FreeSurfer Installation on Personal Laptops	one-on-one	Nick Schmansky
5:35 -	optional - Start Processing Your Own Data	one-on-one	Allison Stevens

Wednesday, October 6th -

9:00 - 10:15	Multi-Modal Integration	talk	Doug Greve
10:15 - 11:15	Multi-Modal Integration Tutorial	tutorial	staff
11:15 - 11:30	break
11:30 - 12:00	Accuracy, Reliability and Validation	talk	David Salat
12:00 - 1:00	Lunch	--	--
1:00 - 1:20	Inferring architectonic boundaries from in-vivo MRI	talk	Bruce Fischl
1:20 - 2:20	FSFAST	talk	Doug Greve
2:20 - 3:15	FSFAST	tutorial	staff
3:15 - 3:30	break
3:30 - 4:00	Longitudinal tutorial; checking recon-all.log of failed subject; how to report bugs/ask questions on list	tutorial	staff
4:00 - 4:30	Evaluation	online	attendees
4:30 - 5:15	Question and Answer Session, FsQuiz	talk	staff

FsTutorial/Feb2011CourseSchedule (last edited 2010-11-10 16:49:16 by AllisonStevens)

-  ⇤ ← Revision 1 as of 2010-07-28 20:43:06 → 
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+   ← Revision 7 as of 2010-11-10 16:49:16 → ⇥
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-=== FreeSurfer Course, October 4 and 5, 2010 ===
+=== FreeSurfer Course, April 4 and 5, 2010 ===
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-|| 9:30 - 10:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Bruce Fischl ||
+|| 9:30 - 10:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Doug Greve ||
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-|| 12:15 - 1:15 || Lunch || -- || -- ||
|| 1:15 - 2:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve ||
|| 2:15 - 2:45 || [[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] || tutorial || staff ||
|| 2:45 - 3:00 || '''break''' || || ||
|| 3:00 - 3:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Mert Sabuncu ||
|| 3:45 - 4:45 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] || tutorial || staff ||
|| 4:45 - 5:00 || QDEC demonstration || demo || Nick Schmansky ||
|| 5:00 - 5:45 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] || tutorial || staff ||
|| 5:45 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky  ||
|| 5:45 - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens ||
+|| 12:15 - 1:15 || '''Lunch''' || -- || -- ||
|| ''12:30 - 1:00'' || ''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]]'' || ''talk'' || ''David Salat''||
|| 1:15 - 1:45 ||  [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|Intro to MR|&do=get]] || talk || Dylan Tisdall ||
|| 1:45 - 2:30 ||  [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] || talk || Andre van der Kouwe ||
|| 2:30 - 2:45 || '''break''' || || ||
|| 2:45 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing|| talk || Martin Reuter ||
|| 3:15 - 3:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl||
|| 3:45 - 4:45 || Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]]|| tutorial || staff, Allison ||
|| 4:45 - 5:30 || Quality Checking a Recon || demo || Allison Stevens ||
|| 5:30 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky  ||
|| 5:30 - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens ||
-Line 31:
+Line 32:
-|| 9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat ||
|| 9:30 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing|| talk || Martin Reuter ||
|| 10:00 - 10:30 || Longitudinal Tutorial || tutorial  || staff ||
|| 10:30 - 11:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat ||
|| 11:15 - 11:30 || '''break''' || || ||
|| 11:30 - 12:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl||
|| 12:00 - 1:00 || Lunch || -- || -- ||
|| 1:00 - 2:00 || Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]]|| tutorial || staff, Allison ||
|| 2:00 - 2:30 || Quality Checking a Recon || demo || Allison Stevens ||
|| 2:30 - 3:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] || talk || Doug Greve ||
|| 3:45 - 4:00 || '''break''' || || ||
|| 4:00 - 5:00 || [[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] || tutorial || staff ||
|| 5:00 - 5:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei ||
|| 5:30 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky  ||
|| 5:30 - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens ||
+|| 9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Mert Sabuncu ||
|| 10:00 - 11:00 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] || tutorial || staff ||
|| 11:00 - 11:15 || '''break''' || || ||
|| 11:15 - 11:45 || QDEC demonstration || demo || Nick Schmansky ||
|| 11:45 - 12:30 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] || tutorial || staff ||
|| 12:30 - 1:30 || '''Lunch''' || -- || -- ||
|| ''12:45 - 1:15'' || ''Optional Lunch Talk''- ''Which What to Register'' || ''talk'' || ''Lilla Zollei''||
|| 1:30 - 2:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve ||
|| 2:30 - 3:00 || [[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] || tutorial || staff ||
|| 3:00 - 3:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei ||
|| 3:30 - 3:45 || '''break''' || || ||
|| 3:45 - 4:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Introduction to Diffusion Processing|&do=get]] || talk || Lilla Zollei ||
|| 4:15 - 5:15 || Diffusion Tutorial || tutorial || staff ||
|| 5:15 - 5:35 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki ||
|| 5:35 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky  ||
|| 5:35 - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens ||
-Line 48:
+Line 50:
-|| 9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Introduction to Diffusion Processing|&do=get]] || talk || Lilla Zollei ||
|| 9:30 - 10:00 || Combined Gray Matter/White Matter Analysis of the Aging Brain || talk || David Salat ||
|| 10:30 - 11:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki ||
|| 11:00 - 11:15 || '''break''' || || ||
|| 11:15 - 12:00 || Trackvis Tutorial || talk || staff ||
|| 12:00 - 12:30 ||  [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] || talk || Andre van der Kouwe ||
|| 12:30 - 1:30 || Lunch || -- || -- ||
|| 1:30 - 2:30 || FSFAST || talk || Doug Greve ||
|| 2:30 - 3:30 || FSFAST || tutorial || staff ||
|| 3:30 - 4:15 || [[http://www.bme.uct.ac.za/freesurfer/event-related.pdf|Designing Event-related Experiments for fMRI|&do=get]] || talk || Doug Greve ||
|| 4:15 - 5:30 || Future Directions of !FreeSurfer: || || ||
|| 4:15 - 4:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl ||
|| 4:45 - 5:15 || Other Future Directions || talk || ? ||
|| 5:15 - 5:45 || Question and Answer Session, FsQuiz || talk || staff ||
+|| 9:00 - 10:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] || talk || Doug Greve ||
|| 10:15 - 11:15 || [[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] || tutorial || staff ||
|| 11:15 - 11:30 || '''break''' || || ||
|| 11:30 - 12:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat ||
|| 12:00 - 1:00 || '''Lunch''' || -- || -- ||
|| 1:00 - 1:20 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl ||
|| 1:20 - 2:20 || FSFAST || talk || Doug Greve ||
|| 2:20 - 3:15 || FSFAST || tutorial || staff ||
|| 3:15 - 3:30 || '''break''' || || ||
|| 3:30 - 4:00 || Longitudinal tutorial; checking recon-all.log of failed subject; how to report bugs/ask questions on list || tutorial || staff ||
|| 4:00 - 4:30 || Evaluation || online || attendees ||
|| 4:30 - 5:15 || Question and Answer Session, FsQuiz || talk || staff ||