Differences between revisions 5 and 33 (spanning 28 versions)
Revision 5 as of 2011-10-05 11:25:47
Size: 8619
Comment:
Revision 33 as of 2011-12-14 13:58:53
Size: 11084
Comment:
Deletions are marked like this. Additions are marked like this.
Line 4: Line 4:
=== Monday, December 12th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|online practice]] ||tutorial ||Allison Stevens ||
||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk ||Allison Stevens ||
||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2011.jpg|staff]] ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl ||
||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve ||
||10:30 - 10:50 ||'''break''' || || ||
||10:50 - 11:20 ||Tkmedit/Tksurfer demonstration ||demo ||Doug Greve ||
||11:20 - 11:50 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||11:50 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] ||talk ||Doug Greve ||
||12:30 - 1:30 ||'''Lunch''' [[attachment:lunch_map.jpg| (Suggestions)]]||-- ||-- ||
||''1:00 - 1:30'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' ||''Dylan Tisdall'' ||
||1:30 - 2:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||
||2:15- 2:55 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk ||Bruce Fischl ||
||2:55 - 3:15 ||'''break''' || || ||
||3:15 - 3:35 ||Troubleshooting Demonstration || demo || Allison ||
||3:35 - 4:35 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
||4:35 - 5:30 || Quality Checking a Recon ||demo ||Allison Stevens ||
||5:30 - ||'''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] ||one-on-one || staff ||
||5:30 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]] ||one-on-one || staff ||
=== Monday, December 12th - Introduction / Single Subject / Registration / Troubleshooting ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || '''Give us your feedback''' ||
||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|online practice]] ||tutorial ||Allison Stevens || [[https://docs.google.com/spreadsheet/viewform?formkey=dHoxeWZGZktvSk1PY0laUXhacm9SUVE6MQ| Rate it!]]||
||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk ||Allison Stevens || [[https://docs.google.com/spreadsheet/viewform?formkey=dDF5NU5aYVVVU2tiTkwtWTc2X3JWOGc6MA| Rate it!]]||
||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2011.jpg|staff]] || ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl || [[https://docs.google.com/spreadsheet/viewform?formkey=dEtkaFJpUTRLd3NLSW9GUjFobEx1Qmc6MA| Rate it!]]||
||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve || [[https://docs.google.com/spreadsheet/viewform?formkey=dEdYdm5WaVd3bVdSdU0zMXo1cUdtenc6MA| Rate it!]]||
||10:30 - 10:50 ||'''break''' || || || ||
||10:50 - 11:20 ||Tkmedit/Tksurfer demonstration ||demo ||Doug Greve || [[https://docs.google.com/spreadsheet/viewform?formkey=dEtWdXZZRXdoVnk5ZG1NcnNCZmdZZGc6MA| Rate it!]]||
||11:20 - 11:50 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dFJaZjVXWHlsYUpTaXItLUxJWjlrelE6MA| Rate it!]]||
||11:50 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] ||talk ||Doug Greve || [[https://docs.google.com/spreadsheet/viewform?formkey=dDE5eWlFSmpQR0ZrZEFrQWJLVjZuTnc6MA| Rate it!]]||
||12:30 - 1:30 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg| (Suggestions for where to eat)]]||-- ||-- ||
||''1:00 - 1:30'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Dec_12_2011_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' ||''Dylan Tisdall'' || [[https://docs.google.com/spreadsheet/viewform?formkey=dGdoMmtpdjc1LXZiSm1JZWsySVBnZ2c6MA| Rate it!]]||
||1:30 - 2:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei || [[https://docs.google.com/spreadsheet/viewform?formkey=dGQzdXhUSGt6N2FwWEIzYm04WkV1eEE6MA| Rate it!]]||
||2:15- 2:55 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk ||Bruce Fischl || [[https://docs.google.com/spreadsheet/viewform?formkey=dEZNdUJSOEhEUE41ZS0wREhjSm02SkE6MA| Rate it!]]||
||2:55 - 3:15 ||'''break''' || || || ||
||3:15 - 3:35 ||Troubleshooting Demonstration || demo || Allison ||[[https://docs.google.com/spreadsheet/viewform?formkey=dFEzNk04U1lLSE1heno3bC1TNmpBRkE6MA| Rate it!]]||
||3:35 - 4:35 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dGZtMXV2cWw1LUZ6WXVzazZkWl8zUGc6MA| Rate it!]]||
||4:35 - 5:30 || Quality Checking a Recon ||demo ||Allison Stevens || [[https://docs.google.com/spreadsheet/viewform?formkey=dFROM0FnOGg2VU5TaTJoOHkxQ3lpeGc6MA|Rate it!]]||
||5:30 - ||'''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] ||one-on-one || staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dFgydlJTRVRLaC1IUG9EeHhSeFpTclE6MA|Rate it!]]||
||5:30 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]] ||one-on-one || staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dEtxNDlDWGRhSjdTd19NZjVQQUVZeUE6MA|Rate it!]]||
Line 28: Line 28:
If you miss us, we are taking the 6:45pm MGH/Navy Yard shuttle to North Station (the next one departs at 6:45pm). From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right. If you miss us, we are taking the 6:45pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 7pm, 7:15pm, and 7:45pm).
From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.
Line 31: Line 32:
=== Tuesday, December 13th - Group Analysis/ ROIs / Registration / Diffusion ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||
||10:00 - 10:30 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
=== Tuesday, December 13th - ROIs / Longitudinal / Multimodal / Group Analysis ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || '''Give us your feedback''' ||
||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve || [[https://docs.google.com/spreadsheet/viewform?formkey=dGFhYUVwanFCcFhYeEJPSzIxU0pSeWc6MA| Rate it!]]||
||10:00 - 10:30 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dGQwaXFrVnJxQ1Z2eURhZ1RuR0tnMlE6MA| Rate it!]]||
Line 36: Line 37:
||10:50 - 11:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||
||11:20 - 12:10 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||
||10:50 - 11:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.pdf|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter || [[https://docs.google.com/spreadsheet/viewform?formkey=dHhCcFFGcHVrdzZmTkR2RFpQSjh3bnc6MA| Rate it!]] ||
||11:20 - 12:10 ||Freeview Demo, [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dGFDd21lOVljSEhnRTM3MWM5SjU3ZGc6MA| Rate it!]]||
Line 39: Line 40:
||''12:40 - 1:10'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' ||
||1:10 - 1:40 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] ||talk ||Bruce Fischl ||
||1:40 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve ||
||''12:40 - 1:10'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' || [[https://docs.google.com/spreadsheet/viewform?formkey=dEJaSDhJeUYycERmQ0hwTWhUVEh1dUE6MA| Rate it!]]||
||1:10 - 1:40 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] ||talk ||Bruce Fischl || [[https://docs.google.com/spreadsheet/viewform?formkey=dGZZQnQwUVIyU0V3SVhaR3Vva1Utbmc6MA| Rate it!]]||
||1:40 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve || [[https://docs.google.com/spreadsheet/viewform?formkey=dHFpd2I5U2ROSjQwSU11N3Z4Tjhmcnc6MA| Rate it!]]||
Line 43: Line 44:
||3:00 - 3:45 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
||3:45 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk ||Mert Sabuncu ||
||4:45 - 5:15 ||QDEC demonstration ||demo ||Nick Schmansky ||
||5:15 - 6:15 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||5:15 - 6:15 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||

Alternatively:
||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk ||Mert Sabuncu ||
||10:00 - 10:30 ||QDEC demonstration ||demo ||Nick Schmansky ||
||10:30 - 10:50 ||'''break''' || || ||
||10:50 - 11:50 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||10:50 - 11:50 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
||11:50 - 12:50 ||'''Lunch''' ||-- ||-- ||
||''12:15 - 12:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' ||
||12:50 - 1:20 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] ||talk ||Bruce Fischl ||
||1:20 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||
||2:20 - 2:50 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||2:50 - 3:10 ||'''break''' || || ||
||3:10 - 3:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||
||3:40 - 4:30 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||
||4:30 - 5:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve ||
||5:30 - 6:15 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
||3:00 - 3:45 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dG1tMHg0M2xMSmZmcjBzVWV3TDZLZ0E6MA| Rate it!]]||
||3:45 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || J. Eugenio Iglesias || [[https://docs.google.com/spreadsheet/viewform?formkey=dHlYOHlFYjQzOENhb3JaOWl4SjRiUVE6MA| Rate it!]]||
||4:45 - 5:15 ||QDEC demonstration ||demo ||Nick Schmansky || [[https://docs.google.com/spreadsheet/viewform?formkey=dDNwZXg5eG1Fc3E1RnJQcDNoM1VRdlE6MA| Rate it!]]||
||5:15 - 6:15 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dEJaWVhJbkFDUm1iUU9hcmdNWWxjaXc6MA| Rate it! ]]||
||5:15 - 6:15 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dDlpa05FZlZCLUh5N0U0U0JlVkxFQlE6MA| Rate it!]]||
Line 67: Line 51:
=== Wednesday, December 14th - Multi-Modal / Future Directions / fMRI / Q&A ===
||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fmri.april2011.pdf|Basics of fMRI Analysis|&do=get]] ||talk ||Doug Greve ||
=== Wednesday, December 14th - fMRI / Diffusion / Q&A ===
[[https://docs.google.com/spreadsheet/viewform?formkey=dHVDa09yN0g1VHQzRGlEdTdiQU1xZFE6MA |The Course Evaluation has been posted. ]] Please feel free to start filling it out!

||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || '''Give us your feedback''' ||
||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fmri.april2011.pdf|Basics of fMRI Analysis|&do=get]] ||talk || Jon Polimeni || [[https://docs.google.com/spreadsheet/viewform?formkey=dGpsTlZaa2pNRWxacnRHQnk0MG9IUVE6MA| Rate it!]]||
Line 70: Line 57:
||10:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve ||
||11:40 - 12:40 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff ||
||10:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve || [[https://docs.google.com/spreadsheet/viewform?formkey=dHZCWlpYcU8tWGNtdHJIRmc3VjlMMUE6MA| Rate it!]]||
||11:40 - 12:40 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff || [[ https://docs.google.com/spreadsheet/viewform?formkey=dHBXU2FQMVJjVndjNjI4S1hhYmpkWkE6MA| Rate it!]]||
Line 73: Line 60:
||''1:10 - 1:40'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/motion_correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' ||
||1:40 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki ||
||2:40 - 3:25 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||
||3:25 - 3:45 ||'''break''' & [[https://spreadsheets.google.com
/viewform?formkey=dGlVV3Bzb296bnBWN3lBc3l5U3lPUGc6MA|Evaluation]] || || ||
||3:45 - 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki ||
||4:15 - 5:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||5:00 - 5:30 ||Question and Answer Session, FsQuiz ||talk ||staff ||
||''1:10 - 1:40'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Dec_14_2011_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' || [[https://docs.google.com/spreadsheet/viewform?formkey=dFNGWE1wUjlwczVNWGJMYnpjUDRfSVE6MA| Rate it!]]||
||1:40 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki || [[https://docs.google.com/spreadsheet/viewform?formkey=dGZYT201c1FlZzZtNzBfVDMyZl85cEE6MA| Rate it!]]||
||2:40 - 3:25 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dHVnRmI0eTZOZDdxX3hPRjZjaE5USVE6MA| Rate it!]]||
||3:25 - 3:45 ||'''break''' & [[https://docs.google.com/spreadsheet/viewform?formkey=dHVDa09yN0g1VHQzRGlEdTdiQU1xZFE6MA |
Evaluation]] || || ||
||3:45 - 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki || [[https://docs.google.com/spreadsheet/viewform?formkey=dEl6ZS1fT0ZpMkNfVHZEcnVfUjBBT2c6MA| Rate it!]]||
||4:15 - 5:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dERyMFBoZUNfTkpXZ1JpLVJyWVN1S2c6MA| Rate it!]]||
||5:00 - 5:30 ||Question and Answer Session, FsQuiz ||talk ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dHJfWkd4QXNqTU42dThJQzAzNHAycHc6MA| Rate it! ]]||

FreeSurfer Course, December 12-14, 2011

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, December 12th - Introduction / Single Subject / Registration / Troubleshooting

Time

Title

Type

Lecturer

Give us your feedback

8:00 - 8:30

optional - Unix Tutorial for FreeSurfer Users online practice

tutorial

Allison Stevens

Rate it!

8:30 - 9:00

optional - Intro to FreeSurfer Jargon

talk

Allison Stevens

Rate it!

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Introduction to Freesurfer

talk

Bruce Fischl

Rate it!

9:30 - 10:30

Analyzing the Individual Subject

talk

Doug Greve

Rate it!

10:30 - 10:50

break

10:50 - 11:20

Tkmedit/Tksurfer demonstration

demo

Doug Greve

Rate it!

11:20 - 11:50

Interaction with Individual Subject Data Tutorial

tutorial

staff

Rate it!

11:50 - 12:30

Surface-based Smoothing/Surface-based Registration

talk

Doug Greve

Rate it!

12:30 - 1:30

Lunch (Suggestions for where to eat)

--

--

1:00 - 1:30

Optional Lunch Talk- A Non-physicist's Intro to MR SpinBench

talk

Dylan Tisdall

Rate it!

1:30 - 2:15

Registration Methods

talk

Lilla Zollei

Rate it!

2:15- 2:55

Failure Modes

talk

Bruce Fischl

Rate it!

2:55 - 3:15

break

3:15 - 3:35

Troubleshooting Demonstration

demo

Allison

Rate it!

3:35 - 4:35

Troubleshooting Tutorial

tutorial

staff

Rate it!

4:35 - 5:30

Quality Checking a Recon

demo

Allison Stevens

Rate it!

5:30 -

optional - FreeSurfer Installation on Personal Laptops

one-on-one

staff

Rate it!

5:30 -

optional - Start Processing Your Own Data

one-on-one

staff

Rate it!

Boston Beer Works location information here and here.
Meet us at 6:40pm at the front of Building 149 (the entrance on the opposite side of the building from where the Course is held).
If you miss us, we are taking the 6:45pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 7pm, 7:15pm, and 7:45pm). From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.

Tuesday, December 13th - ROIs / Longitudinal / Multimodal / Group Analysis

Time

Title

Type

Lecturer

Give us your feedback

9:00 - 10:00

ROI Analysis

talk

Doug Greve

Rate it!

10:00 - 10:30

ROI Analysis Tutorial

tutorial

staff

Rate it!

10:30 - 10:50

break

10:50 - 11:20

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

Rate it!

11:20 - 12:10

Freeview Demo, Longitudinal Tutorial

tutorial

staff

Rate it!

12:10 - 1:10

Lunch

--

--

12:40 - 1:10

Optional Lunch Talk- MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

Rate it!

1:10 - 1:40

Future Directions: Inferring architectonic boundaries from in-vivo MRI

talk

Bruce Fischl

Rate it!

1:40 - 2:40

Multi-Modal Integration

talk

Doug Greve

Rate it!

2:40 - 3:00

break

3:00 - 3:45

Multi-Modal Integration Tutorial

tutorial

staff

Rate it!

3:45 - 4:45

Group Analysis / GLM / Multiple Comparisons

talk

J. Eugenio Iglesias

Rate it!

4:45 - 5:15

QDEC demonstration

demo

Nick Schmansky

Rate it!

5:15 - 6:15

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

Rate it!

5:15 - 6:15

Group Analysis - qdec Tutorial

tutorial

staff

Rate it!

Wednesday, December 14th - fMRI / Diffusion / Q&A

The Course Evaluation has been posted. Please feel free to start filling it out!

Time

Title

Type

Lecturer

Give us your feedback

9:00 - 10:00

Basics of fMRI Analysis

talk

Jon Polimeni

Rate it!

10:00 - 10:20

break

10:20 - 11:40

FSFAST

talk

Doug Greve

Rate it!

11:40 - 12:40

FSFAST Tutorial

tutorial

staff

Rate it!

12:40 - 1:40

Lunch

--

--

1:10 - 1:40

Optional Lunch Talk- Motion-compensated neuroanatomical imaging

talk

Dylan Tisdall

Rate it!

1:40 - 2:40

Introduction to Diffusion MRI

talk

Anastasia Yendiki

Rate it!

2:40 - 3:25

Diffusion Processing Tutorial

tutorial

staff

Rate it!

3:25 - 3:45

break & Evaluation

3:45 - 4:15

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

Rate it!

4:15 - 5:00

Tracula Tutorial

tutorial

staff

Rate it!

5:00 - 5:30

Question and Answer Session, FsQuiz

talk

staff

Rate it!

FsTutorial/Dec2011CourseSchedule (last edited 2011-12-14 13:58:53 by NickSchmansky)