Diff for "FsTutorial/Dec2011CourseSchedule"

Differences between revisions 12 and 22 (spanning 10 versions)

FreeSurfer Course, December 12-14, 2011

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, December 12th - Introduction / Single Subject / Registration / Troubleshooting

Time	Title	Type	Lecturer	Give us your feedback
8:00 - 8:30	optional - Unix Tutorial for FreeSurfer Users online practice	tutorial	Allison Stevens	Rate it!
8:30 - 9:00	optional - Intro to FreeSurfer Jargon	talk	Allison Stevens	Rate it!
8:30 - 9:00	Course Registration	sign-in	staff
9:00 - 9:30	Introduction to Freesurfer	talk	Bruce Fischl	Rate it!
9:30 - 10:30	Analyzing the Individual Subject	talk	Doug Greve	Rate it!
10:30 - 10:50	break
10:50 - 11:20	Tkmedit/Tksurfer demonstration	demo	Doug Greve	Rate it!
11:20 - 11:50	Interaction with Individual Subject Data Tutorial	tutorial	staff	Rate it!
11:50 - 12:30	Surface-based Smoothing/Surface-based Registration	talk	Doug Greve	Rate it!
12:30 - 1:30	Lunch (Suggestions for where to eat)	--	--
1:00 - 1:30	Optional Lunch Talk- A Non-physicist's Intro to MR SpinBench	talk	Dylan Tisdall
1:30 - 2:15	Registration Methods	talk	Lilla Zollei
2:15- 2:55	Failure Modes	talk	Bruce Fischl
2:55 - 3:15	break
3:15 - 3:35	Troubleshooting Demonstration	demo	Allison
3:35 - 4:35	Troubleshooting Tutorial	tutorial	staff
4:35 - 5:30	Quality Checking a Recon	demo	Allison Stevens
5:30 -	optional - FreeSurfer Installation on Personal Laptops	one-on-one	staff
5:30 -	optional - Start Processing Your Own Data	one-on-one	staff

Boston Beer Works location information here and here.
Meet us at 6:40pm at the front of Building 149 (the entrance on the opposite side of the building from where the Course is held).
If you miss us, we are taking the 6:45pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 7pm, 7:15pm, and 7:45pm). From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.

Tuesday, December 13th - ROIs / Longitudinal / Multimodal / Group Analysis

Time	Title	Type	Lecturer
9:00 - 10:00	ROI Analysis	talk	Doug Greve
10:00 - 10:30	ROI Analysis Tutorial	tutorial	staff
10:30 - 10:50	break
10:50 - 11:20	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
11:20 - 12:10	Freeview Demo, Longitudinal Tutorial	tutorial	staff
12:10 - 1:10	Lunch	--	--
12:40 - 1:10	Optional Lunch Talk- MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
1:10 - 1:40	Future Directions: Inferring architectonic boundaries from in-vivo MRI	talk	Bruce Fischl
1:40 - 2:40	Multi-Modal Integration	talk	Doug Greve
2:40 - 3:00	break
3:00 - 3:45	Multi-Modal Integration Tutorial	tutorial	staff
3:45 - 4:45	Group Analysis / GLM / Multiple Comparisons	talk	J. Eugenio Iglesias
4:45 - 5:15	QDEC demonstration	demo	Nick Schmansky
5:15 - 6:15	Group Analysis / Multiple Comparisons - mri_glmfit Tutorial	tutorial	staff
5:15 - 6:15	Group Analysis - qdec Tutorial	tutorial	staff

Wednesday, December 14th - fMRI / Diffusion / Q&A

9:00 - 10:00	Basics of fMRI Analysis	talk	Jon Polimeni
10:00 - 10:20	break
10:20 - 11:40	FSFAST	talk	Doug Greve
11:40 - 12:40	FSFAST Tutorial	tutorial	staff
12:40 - 1:40	Lunch	--	--
1:10 - 1:40	Optional Lunch Talk- Motion-compensated neuroanatomical imaging	talk	Dylan Tisdall
1:40 - 2:40	Introduction to Diffusion MRI	talk	Anastasia Yendiki
2:40 - 3:25	Diffusion Processing Tutorial	tutorial	staff
3:25 - 3:45	break & Evaluation
3:45 - 4:15	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
4:15 - 5:00	Tracula Tutorial	tutorial	staff
5:00 - 5:30	Question and Answer Session, FsQuiz	talk	staff

FsTutorial/Dec2011CourseSchedule (last edited 2011-12-14 13:58:53 by NickSchmansky)

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-||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|online practice]] ||tutorial ||Allison Stevens ||
||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk ||Allison Stevens ||
||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2011.jpg|staff]] ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl ||
||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve ||
||10:30 - 10:50 ||'''break''' || || ||
||10:50 - 11:20 ||Tkmedit/Tksurfer demonstration ||demo ||Doug Greve ||
||11:20 - 11:50 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||11:50 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] ||talk ||Doug Greve ||
||12:30 - 1:30 ||'''Lunch''' [[attachment:lunch_map.jpg|  (Suggestions for where to eat)]]||-- ||-- ||
+||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || '''Give us your feedback''' ||
||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|online practice]] ||tutorial ||Allison Stevens || [[https://docs.google.com/spreadsheet/viewform?formkey=dHoxeWZGZktvSk1PY0laUXhacm9SUVE6MQ| Rate it!]]||
||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk ||Allison Stevens || [[https://docs.google.com/spreadsheet/viewform?formkey=dDF5NU5aYVVVU2tiTkwtWTc2X3JWOGc6MA| Rate it!]]||
||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2011.jpg|staff]] || ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl || [[https://docs.google.com/spreadsheet/viewform?formkey=dEtkaFJpUTRLd3NLSW9GUjFobEx1Qmc6MA| Rate it!]]||
||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve || [[https://docs.google.com/spreadsheet/viewform?formkey=dEdYdm5WaVd3bVdSdU0zMXo1cUdtenc6MA| Rate it!]]||
||10:30 - 10:50 ||'''break''' || || || ||
||10:50 - 11:20 ||Tkmedit/Tksurfer demonstration ||demo ||Doug Greve || [[https://docs.google.com/spreadsheet/viewform?formkey=dEtWdXZZRXdoVnk5ZG1NcnNCZmdZZGc6MA| Rate it!]]||
||11:20 - 11:50 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dFJaZjVXWHlsYUpTaXItLUxJWjlrelE6MA| Rate it!]]||
||11:50 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] ||talk ||Doug Greve || [[https://docs.google.com/spreadsheet/viewform?formkey=dDE5eWlFSmpQR0ZrZEFrQWJLVjZuTnc6MA| Rate it!]]||
||12:30 - 1:30 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|  (Suggestions for where to eat)]]||-- ||-- ||
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-||10:50 - 11:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||
+||10:50 - 11:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.pdf|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||
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-||3:45 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk ||Mert Sabuncu ||
+||3:45 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || J. Eugenio Iglesias ||