#acl LcnGroup:read,write,delete,revert All:read
'''!FreeSurfer Course, August 10-12'''

==== Wednesday, August 10th - Introduction / Single Subject Analysis /Troubleshooting ====
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial.ppt|Unix Tutorial for FreeSurfer Users]] ||talk/tutorial ||Allison Stevens ||
||9:30 - 9:45 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/CphAug2016/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk || Allison Stevens & Lilla Zollei ||
||9:45 - 10:00 ||'''break''' || || ||
||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Emily Lindemer ||
||10:30 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Emily Lindemer ||
||11:30 - 11:45 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Allison Stevens ||
||11:45 - 12:15 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||12:15 - 1:15 ||'''Lunch''' ||-- ||-- ||
||1:15 - 1:45 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||1:45 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Allison Stevens ||
||2:30 - 2:45 ||Freeview Troubleshooting demonstration ||[[FreeviewGuide|demo]] ||Allison Stevens ||
||2:45 - 3:05 ||'''break''' || || ||
||3:05 - 4:05 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
||4:05 - 5:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo ||Allison Stevens ||
||5:05 - 5:45 ||NRU - A high resolution in vivo atlas of the human brain's serotonin system || || ||

==== Thursday, August 11th - Group Analysis / ROI Analysis / Longitudinal  ====
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/CphAug2016/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk ||Lilla Zollei ||
||9:30 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ERL.ppt|Group Analysis]] ||talk ||Emily Lindemer ||
||10:20 - 10:40 ||'''break''' || ||
||10:40 - 11:20 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||
||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Emily Lindemer ||
||11:40 - 12:00 ||QDEC demonstration ||demo ||Martin Reuter ||
||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||
||1:00 - 1:20 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||
||1:20 - 2:00 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Martin Reuter ||
||2:30 - 2:50 ||'''break''' || ||
||2:50 - 3:20 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:20 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Martin Reuter ||
||3:50 - 4:30 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||
||4:30 - 5:30 ||NRU - PLS applied to PET data in SAD ||-- ||-- ||



==== Friday, August 12th - Multimodal /  Diffusion / Future Directions  ====
##[[https://docs.google.com/spreadsheet/viewform?formkey=dGZKM24xb1NpRDRJOHhwdmxCUm9CbFE6MA |The Course Evaluation has been posted. ]] Please feel free to start filling it out!
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part1.ppt|Multi-Modal Integration, Part1]][http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part2.ppt|Multi-Modal Integration, Part2]] ||talk ||Martin Reuter ||
||10:00 - 11:00 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
||11:00 - 11:15 ||'''break''' || ||
||11:15 - 12:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/CphAug2016/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Lilla Zollei ||
||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||
||1:00 - 1:40 || Diffusion Tutorial || tutorial || staff||
||1:40 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/CphAug2016/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Lilla Zollei||
||2:30 - 3:10 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||3:10 - 3:30 ||'''break''' & Evaluation || ||
||3:30 - 4:00 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/CphAug2016/fs.registration.ppt|Registration Methods]] ||talk ||Lilla Zollei ||
||4:00 - 4:30 ||Future Directions ||talk ||Emily Lindemer ||
||4:30 - 5:00 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff ||


##'''The !FreeSurfer Evaluation is [[ https://docs.google.com/spreadsheet/viewform?formkey=dGZKM24xb1NpRDRJOHhwdmxCUm9CbFE6MA|here]]!'''