Diff for "FsTutorial/CapeTown2010CourseSchedule"

Differences between revisions 1 and 11 (spanning 10 versions)

FreeSurfer Course, 11-12 February 2010

Cape Town, South Africa

Centre for High Performance Computing (CHPC), map

Thursday, February 11th - Introduction / Single Subject / Group Analysis

Time	Title	Type	Lecturer
8:00 - 8:30	optional - Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly	tutorial	Allison Stevens
8:30 - 9:00	Course Registration	sign-in
9:00 - 9:30	Introduction to Freesurfer	talk	David Salat
9:30 - 10:30	Analyzing the Individual Subject	talk	Doug Greve
10:30 - 10:45	break
10:45 - 11:15	Tkmedit/Tksurfer demonstration	demo	Doug Greve
11:15 - 11:45	Interaction with Individual Subject Data	tutorial	staff
11:45 - 12:15	MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
12:15 - 12:30	break
12:30 - 13:00	Working lunch Optional talk - Combined Gray Matter/White Matter Analysis of the Aging Brain	talk	David Salat
13:00 - 13:30	lunch
13:30 - 14:15	FreeSurfer Applications	talk	David Salat
14:15 - 14:45	Surface-based Smoothing/Surface-based Registration	talk	Doug Greve
14:45 - 15:00	break
15:00 - 15:45	Group Analysis / GLM / Multiple Comparisons	talk	Doug Greve
15:45 - 16:00	QDEC demonstration	demo	Doug Greve
16:00 - 17:00	Group Analysis / Multiple Comparisons - mri_glmfit	tutorial	staff
17:00 - 17:45	Group Analysis - qdec	tutorial	staff

Friday, February 12th - ROIs / Troubleshooting / Multi-Modal / Q&A

Time	Title	Type	Lecturer
9:00 - 9:30	Accuracy, Reliability and Validation	talk	David Salat
9:30 - 10:30	ROI Analysis	talk	Doug Greve
10:30 - 11:00	ROI Analysis	tutorial	staff
11:00 - 11:30	break
11:30 - 12:00	Failure Modes	talk	Allison Stevens
12:00 - 12:30	Step-by-Step Through a Recon, Troubleshooting Tutorial demonstration	demo	Allison
12:30 - 13:15	lunch
13:15 - 14:15	Troubleshooting	tutorial	staff
14:15 - 15:30	Multi-Modal Integration	talk	Doug Greve
15:30 - 15:45	break
15:45 - 16:45	Multi-Modal Integration	tutorial	staff
16:45 - 17:30	fMRI	talk	Doug Greve

FsTutorial/CapeTown2010CourseSchedule (last edited 2010-02-11 11:43:38 by AllisonStevens)

-  ⇤ ← Revision 1 as of 2010-01-07 13:53:21 → 
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+   ← Revision 11 as of 2010-01-16 13:12:51 → ⇥
  Size: 3767
  Editor: AllisonStevens
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-Deletions are marked like this.
+Additions are marked like this.
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-=== FreeSurfer Course, February 11 and 12, 2010 ===
+=== FreeSurfer Course, 11-12 February 2010 ===
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+[[http://www.chpc.ac.za/|Centre for High Performance Computing (CHPC)]], [[http://www.chpc.ac.za/Contact/contact.php|map]]
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+Line 10:
-|| 8:30 - 9:00 || Course Registration || sign-in || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/boston_fs_course_jan2009.jpg|staff|&do=get]] ||
|| 9:00 - 9:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.2009.ppt|Introduction to Freesurfer|&do=get]]|| talk || Bruce Fischl ||
|| 9:30 - 10:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Bruce Fischl ||
+|| 8:30 - 9:00 || Course Registration || sign-in || ||
|| 9:00 - 9:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.2009.ppt|Introduction to Freesurfer|&do=get]]|| talk || David Salat||
|| 9:30 - 10:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Doug Greve||
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+Line 16:
-|| 11:45 - 12:15 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve ||
|| 12:15 - 12:45 || '''Working lunch''' Optional talk - Introduction to Diffusion Processing || talk || Lilla Zollei ||
|| 12:45 - 1:15 || '''Working lunch''' Optional talk - MRI Acquisition Methods for Morphometry || talk || Andre van der Kouwe ||
|| 1:15 - 2:15 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve ||
|| 2:15 - 2:45 || [[FsTutorial/AnatomicalROI|ROI Analysis]] || tutorial || staff ||
|| 2:45 - 3:00 || '''break''' || || ||
|| 3:00 - 3:45 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Mert Sabuncu ||
|| 3:45 - 4:45 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit]] || tutorial || staff ||
|| 4:45 - 5:00 || QDEC demonstration || demo || Nick Schmansky ||
|| 5:00 - 5:45 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec]] || tutorial || staff ||
|| 5:45 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky  ||
|| 5:45 - || '''optional -''' [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens ||
+|| 11:45 - 12:15 || MRI Acquisition Methods for Morphometry || talk || Andre van der Kouwe  ||
|| 12:15 - 12:30 || '''break''' || || ||
|| 12:30 - 13:00 || '''Working lunch''' Optional talk - Combined Gray Matter/White Matter Analysis of the Aging Brain || talk || David Salat ||
|| 13:00 - 13:30 || '''lunch''' || || ||
|| 13:30 - 14:15 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.2009.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat ||
|| 14:15 - 14:45 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve ||
|| 14:45 - 15:00 || '''break''' || || ||
|| 15:00 - 15:45 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Doug Greve ||
|| 15:45 - 16:00 || QDEC demonstration || demo || Doug Greve ||
|| 16:00 - 17:00 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit]] || tutorial || staff ||
|| 17:00 - 17:45 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec]] || tutorial || staff ||
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-=== Friday, February 12th - ROIs / Troubleshooting / Multi-Modal / Q&A / Future Directions ===
+=== Friday, February 12th - ROIs / Troubleshooting / Multi-Modal / Q&A ===
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-|| 9:30 - 10:00 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] || talk || Martin Reuter ||
|| 10:00 - 10:45 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.2009.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat ||
|| 10:45 - 11:00 || '''break''' || || ||
|| 11:00 - 11:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.2009.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl||
|| 11:30 - 12:30 || [[FsTutorial/TroubleshootingData|Troubleshooting]], Troubleshooting demonstration || tutorial || staff, Allison ||
|| 12:30 - 1:00 || '''Working lunch''' Optional demo - Step-by-Step Through a Recon || demo || TBD ||
|| 1:00 - 1:30 || '''Working lunch''' Optional talk - Combined Gray Matter/White Matter Analysis of the Aging Brain || talk || David Salat ||
|| 1:30 - 2:45 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration: ROI and Surface-based Analysis|&do=get]] || talk || Doug Greve ||
|| 2:45 - 3:45 || [[FsTutorial/MultiModal|Multi-Modal Integration]] || tutorial || staff ||
|| 3:45 - 4:00 || '''break''' || || ||
|| 4:00 - 5:00 || Future Directions of !FreeSurfer: || || ||
|| 4:00 - 4:20 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei ||
|| 4:20 - 4:40|| [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki ||
|| 4:40 - 5:00 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.2009.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl ||
|| 5:00 - 5:30 || Question and Answer Session, FsQuiz || talk || staff ||
+|| 9:30 - 10:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve ||
|| 10:30 - 11:00 || [[FsTutorial/AnatomicalROI|ROI Analysis]] || tutorial || staff ||
|| 11:00 - 11:30 || '''break''' || || ||
|| 11:30 - 12:00 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.2009.ppt|Failure Modes|&do=get]] || talk || Allison Stevens||
|| 12:00 - 12:30 || Step-by-Step Through a Recon, Troubleshooting Tutorial demonstration || demo || Allison ||
|| 12:30 - 13:15 || '''lunch''' || ||  ||
|| 13:15 - 14:15 || [[FsTutorial/TroubleshootingData|Troubleshooting]] || tutorial || staff ||
|| 14:15 - 15:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] || talk || Doug Greve ||
|| 15:30 - 15:45 || '''break''' || || ||
|| 15:45 - 16:45 || [[FsTutorial/MultiModal|Multi-Modal Integration]] || tutorial || staff ||
|| 16:45 - 17:30 || fMRI || talk || Doug Greve ||