Diff for "FsTutorial/BrazilMarch2015CourseSchedule"

Differences between revisions 2 and 5 (spanning 3 versions)

FreeSurfer Course, May 5-7, 2014

8:00 - 9:30am Registration Desk Open

Monday, May 5th - Introduction / Single Subject Analysis /Troubleshooting

Time	Title	Type	Lecturer
8:30 - 9:00	optional - Unix Tutorial for FreeSurfer Users	tutorial	Ani
9:00 - 9:15	optional - Intro to FreeSurfer Jargon	talk	Ani
9:15 - 9:30	break
9:30 - 10:00	Introduction to Freesurfer	talk	AY
10:00 - 11:10	Analyzing the Individual Subject	talk	Lee
11:10 - 11:30	break
11:30 - 12:10
12:10 - 1:10	Lunch (Suggestions for where to eat)	--	--
1:10 - 1:30	Freeview demonstration	demo	Lee
1:30 - 2:30	Interaction with Individual Subject Data Tutorial	tutorial	staff
2:30 - 3:00	FreeSurfer Troubleshooting	talk	Ani
3:00 - 3:20	break
4:00 - 5:00	Troubleshooting Tutorial	tutorial	staff
5:00 - 5:15	Question and Answer Session (Answers to online questions here)	talk	staff

Tuesday, May 6th - Group Analysis / ROI Analysis / Longitudinal

Time	Title	Type	Lecturer

3:20 - 4:00	Quality Checking a Recon	demo	Ani
9:00 - 9:40	Surface-based Analysis: Intersubject Smoothing & Registration	talk	Iman
9:40 - 10:20	Group Analysis	talk	Anastasia Yendiki
10:20 - 10:40	break
10:40 - 11:20	Group Analysis Tutorial	tutorial	staff
11:20 - 11:40	Multiple Comparisons	talk	Anastasia Yendiki
12:00 - 1:00	Lunch	--	--
1:00 - 1:20	Multiple Comparisons Tutorial	tutorial	staff
2:00 - 2:30	ROI Analysis	talk	Lee
2:30 - 2:50	break
2:50 - 3:20	ROI Analysis Tutorial	tutorial	staff

6:05 - 6:20	Question and Answer Session (Answers to online questions here)	talk	staff

Wednesday, May 7th - fMRI / Multimodal / Future Directions / Q&A

Time	Title	Type	Lecturer
3:20 - 3:50	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Iman
3:50 - 4:30	Longitudinal Tutorial	tutorial	staff
4:30 - 5:05	Introduction to Diffusion MRI	talk	Anastasia Yendiki
8:00 - 8:30	optional technical talk - Registration Methods	talk	Iman
11:40 - 12:40	Lunch	--	--
12:40 - 1:40	Multi-Modal Integration	talk	Iman
1:40 - 2:55	Multi-Modal Integration Tutorial	tutorial	staff
2:55 - 3:15	break & Evaluation
3:15 - 4:05	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
4:05 - 4:50	Tracula Tutorial	tutorial	staff

5:20 - 5:50	Question and Answer Session (Answers to online questions here), FsQuiz	talk	staff

FsTutorial/BrazilMarch2015CourseSchedule (last edited 2015-04-29 14:16:07 by LeeTirrell)

-  ⇤ ← Revision 2 as of 2015-01-15 15:26:52 → 
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-||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial ||RA ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||RA ||
+||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial ||Ani ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||Ani||
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-||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||? ||
||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||? ||
+||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||AY ||
||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Lee ||
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-||11:30 - 12:10 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' '' ||talk ||Dylan Tisdall ||
+||11:30 - 12:10 ||'' '' || || ||
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-||1:10 - 1:30 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||RA ||
+||1:10 - 1:30 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Lee ||
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-||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||RA ||
+||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Ani ||
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-||3:20 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo ||RA ||
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-##||5:00 - ||'''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] ||one-on-one || staff || ||
##||5:00 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]] ||one-on-one || staff ||      ||
'''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<<BR>> Meet us in front of [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Map|Building 149]] to catch the 6:15pm shuttle bus (it leaves on time!). <<BR>> If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. Boston Beer Works will be down that street, on your right. (If you miss the 6:15 bus, the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
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-||8:30 - 9:00 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry]] ||talk ||Andre van der Kouwe ||
||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk ||Lilla Zollei||
+|| || || || ||
||3:20 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo ||Ani ||
||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk ||Iman ||
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+Line 32:
-||11:40 - 12:00 ||QDEC demonstration ||demo ||? ||
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+Line 34:
-||1:20 - 2:00 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis]] ||talk ||? ||
+||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis]] ||talk ||Lee ||
-Line 43:
+Line 37:
-||3:20 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Martin Reuter ||
||3:50 - 4:30 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
||4:30 - 5:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Anastasia Yendiki ||
||5:05 - 6:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis]] ||talk ||Jon Polimeni ||
+|| || || || ||
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-||8:00 - 8:30 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods]] ||talk ||Lilla Zollei ||
||8:30 - 9:00 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging]] ||talk ||Dylan Tisdall ||
||9:00 - 9:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk ||Doug Greve ||
||9:45 - 10:00 ||'''break''' || ||
||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk ||Doug Greve ||
||10:40 - 11:40 ||[[FsFastTutorialV5.1_freeview|FSFAST Tutorial]] ||tutorial ||staff ||
+||3:20 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Iman ||
||3:50 - 4:30 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
||4:30 - 5:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Anastasia Yendiki ||
||8:00 - 8:30 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods]] ||talk ||Iman ||
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-||12:40 - 1:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.multimodal-integration.ppt|Multi-Modal Integration]] ||talk ||Lilla Zollei ||
+||12:40 - 1:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.multimodal-integration.ppt|Multi-Modal Integration]] ||talk ||Iman ||
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-||4:50 - 5:20 ||Future Directions ||talk ||TBD ||
+|| || || || ||