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FreeSurfer Tutorial and Workshop in São Paulo, Brazil

11 & 12 March 2009

The FreeSurfer Development Team is hosting a two-day course for beginner and experienced users of FreeSurfer. Day 1 will be an introduction to FreeSurfer (or a refresher for those more experienced). Day 2 will cover everything you need to know for analyzing your data. Topics are listed below. There are only 30 available spots for this course. The course will not cover FS-FAST or fMRI analysis.

Computers will be provided to all pairs of registrants, which will have FreeSurfer and data already installed. Attendees will work in pairs (sharing a computer).

The course will be held at São Paulo healthcare complex of HCFMUSP.

Contact: Pedro Paulo de M. Oliveira Jr. ( ppj at netfilter dot com dot br )

Location

Hospital das Clínicas - .kmz - Avenida Dr Eneas de Carvalho Aguiar, 44 - São Paulo - SP - Brazil - (hotel,map)

The course will be held at the Cancer Center Building, in the 6th floor auditorium.

Wednesday, March 11th - Introduction / Single Subject / Group Analysis

Time	Title	Type	Lecturer
8:30 - 9:00	Course Registration	sign-in	staff
9:00 - 9:20	Introductions, and Unix tutorial for FreeSurfer	tutorial	Pedro Paulo in Portuguese
9:20 - 9:50	Introduction to Freesurfer	talk	Nick Schmansky
9:50 - 10:30	FreeSurfer Applications (suppl1,suppl2)	talk	Nick Schmansky
10:30 - 10:45	coffee break
10:45 - 11:45	Analyzing the Individual Subject	talk	Allison Stevens
11:45 - 12:00	Tkmedit/Tksurfer demonstration	demo	Nick Schmansky
12:00 - 1:00	lunch
1:00 - 1:45	Interaction with Individual Subject Data	tutorial	staff
1:45 - 3:00	Group Analysis / GLM / Multiple Comparisons	talk	Lilla Zollei
3:00 - 3:15	QDEC demonstration	demo	Nick Schmansky
3:15 - 3:30	coffee break
3:15 - 4:15	Group Analysis / Multiple Comparisons - mri_glmfit	tutorial	staff
4:15 - 5:00	Group Analysis - qdec	tutorial	staff

Thursday, March 12th - ROIs / Troubleshooting / Multi-Modal / QA / Future Directions

Time	Title	Type	Lecturer
9:00 - 9:40	ROI Analysis	talk	Allison Stevens
9:40 - 10:15	ROI Analysis	tutorial	staff
10:15 - 10:30	coffee break
10:30 - 11:00	Failure Modes	talk	Allison Stevens
11:00 - 12:00	Troubleshooting	tutorial	staff
12:00 - 1:15	lunch
1:15 - 2:15	Multi-Modal Integration: ROI and Surface-based Analysis	talk	Lilla Zollei
2:15 - 3:15	Multi-Modal Integration	tutorial	staff
3:15 - 3:30	coffee break
3:30 - 4:30	Future Directions of FreeSurfer	talk	Lilla Zollei
4:30 - 5:30	Question and Answer Session, FsQuiz	group session	staff

Evaluation form - Closed

FsTutorial/BrazilCourseSchedule (last edited 2011-03-11 08:53:24 by AllisonStevens)

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=== Wednesday, March 11th - Introduction / Single Subject / Group Analysis ===

|| '''Time''' || '''Title''' || '''Type''' || '''Lecturer''' ||
|| 8:00 - 9:00 || Course Registration || sign-in || [[attachment:boston_fs_course_jan2009.jpg|staff|&do=get]] ||
|| 8:00 - 8:30 || '''optional -''' Unix Tutorial for !FreeSurfer [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]]  || tutorial || Allison Stevens ||
|| 9:00 - 9:20 || [[attachment:freesurfer.intro.2009.ppt|Introduction to Freesurfer|&do=get]]|| talk ||  ||
|| 9:20 - 10:00 || [[attachment:freesurfer.applications.2009.ppt|FreeSurfer Applications|&do=get]] || talk ||  ||
|| 10:00 - 10:30 || [[attachment:freesurfer.reliability.2009.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || ||
|| 10:30 - 10:45 || '''break''' || || ||
|| 10:45 - 11:45 || [[attachment:fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Nick Schmansky ||
|| 11:45 - 12:30 || '''lunch''' || ||  ||
|| 12:30 - 1:00  || Tkmedit/Tksurfer demonstration || demo || Nick Schmansky ||
|| 1:00 - 1:30 || [[FsTutorial/OutputData|Interaction with Individual Subject Data]] || tutorial || staff ||
|| 1:30 - 2:45 || [[attachment:freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Lilla Zollei ||
|| 2:45 - 3:00 || QDEC demonstration || demo || Nick Schmansky ||
|| 3:00 - 3:15 || '''break''' || || ||
|| 3:15 - 4:15 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit]] || tutorial || staff ||
|| 4:15 - 5:00 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec]] || tutorial || staff ||
|| 5:00 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky  ||
|| 5:00 - || '''optional -''' Start Processing Your Own Data || one-on-one || Allison Stevens ||

=== Thursday, March 12th - ROIs / Troubleshooting / Multi-Modal / QA / Future Directions ===

|| '''Time''' || '''Title''' || '''Type''' || '''Lecturer''' ||
|| 9:00 - 10:00 || [[attachment:fs.roi.ppt|ROI Analysis|&do=get]] || talk || Allison Stevens ||
|| 10:00 - 10:45 || [[FsTutorial/AnatomicalROI|ROI Analysis]] || tutorial || staff ||
|| 10:45 - 11:00 || '''break''' || || ||
|| 11:00 - 11:15 || [[attachment:freesurfer.failure_modes.2009.ppt|Failure Modes|&do=get]] || talk || Nick Schmansky ||
|| 11:15 - 12:15 || [[FsTutorial/TroubleshootingData|Troubleshooting]] || tutorial || staff ||
|| 12:15 - 1:00 || '''lunch''' || || ||
|| 1:00 - 2:15 || [[attachment:fs.multimodal-integration.ppt|Multi-Modal Integration: ROI and Surface-based Analysis|&do=get]] || talk || Lilla Zollei ||
|| 2:15 - 3:15 || [[FsTutorial/MultiModal|Multi-Modal Integration]] || tutorial || staff ||
|| 3:15 - 3:30 || '''break''' || || ||
|| 3:30 - 4:30 || Question and Answer Session, FsQuiz || talk || staff ||
|| 4:30 - 6:00 || Future Directions of !FreeSurfer || talk || Lilla Zollei ||
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