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| This course will be held at [[https://www.google.com/maps/place/Universitat+Pompeu+Fabra+%7C+Campus+del+Poblenou/@41.404189,2.1914674,17z/data=!3m1!4b1!4m5!3m4!1s0x12a4a257a38c20e1:0x5ff56d0a8cbc150c!8m2!3d41.404185!4d2.1936561 |Universitat Pompeu Fabra in Barcelona]] (Roc Boronat, 138, 08018, Barcelona, Spain). Course organized by [[https://www.barcelonabeta.org/ |BarcelonaBeta Brain Research Center]] (BBRC) and [[http://www.uc3m.es/Home |Universidad Carlos III de Madrid]] (UC3M) with the support of [[https://www.upf.edu/campus/comunicacio/ |Universitat Pompeu Fabra]] (UPF). |
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| '''Click on any of the topics below for more information: <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Overview|Overview]] <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Payment|Payment]] <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#FAQ|FAQ]] <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Lecturers|Lecturers]] <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Accommodations|Accommodations]] <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Map|Map of the Course Location]]''' | '''Click on any of the topics below for more information: <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Schedule|Course Schedule]] <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Payment|Payment]] <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#FAQ|FAQ]] <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Lecturers|Lecturers]] <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Accommodations|Accommodations]]''' |
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| === Overview === The !FreeSurfer Development Team hosts a '''four-day''' course for beginner and experienced users of !FreeSurfer. |
|
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| '''Day 1''' caters to beginners and will cover: | ==== Course Schedule ==== |
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| . An introduction to !FreeSurfer <<BR>> Single Subject Surface-based analysis <<BR>> MRI Acquisition Tips <<BR>> ROI analysis <<BR>> | * Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the !FreeSurfer processing stream. <<BR>> ** Indicates an optional talk that covers basic/beginner material. |
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| '''Day 2''' will cover: | ==== Tuesday, September 5th - Introduction / Single Subject Analysis / ROI Analysis ==== ||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || ||9:00 - 9:30 ||** Intro to Linux for FreeSurfer Users ||talk/demo ||Emma Boyd || ||9:30 - 9:45 ||** Intro to FreeSurfer Jargon ||talk ||Emma Boyd || ||9:45 - 10:15 ||Introduction to Freesurfer ||talk ||Anastasia Yendiki || ||10:15 - 11:25 ||Analyzing the Individual Subject ||talk ||Emma Boyd || ||11:25 - 11:45 ||'''break''' || || || ||11:45 - 12:00 ||Freeview demonstration ||[[FsTutorial/FreeviewDemo|demo]] || Emma Boyd || ||12:00 - 12:30 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||talk ||Emma Boyd || ||12:30 - 12:45 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff || ||12:45 - 13:15 ||Surface-based Analysis: Intersubject Registration & Smoothing ||talk ||TBD || ||13:15 - 14:45 ||'''Lunch''' ||-- ||-- || ||14:45 - 15:45 ||ROI Analysis ||talk ||TBD || ||15:45 - 16:25 ||[[FsTutorial/AnatomicalROIV6.0|ROI Analysis Tutorial]] ||tutorial ||staff || ||16:25 - 16:55 ||** A Non-physicist's Intro to MR ||talk ||Emma Boyd || |
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| . Group analysis <<BR>> Longitudinal analysis<<BR>> Troubleshooting | |
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| '''Day 3''' will cover: | ==== Wednesday, September 6th - Group Analysis / Longitudinal Analysis / Troubleshooting ==== ||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || ||9:00 - 9:50 ||Group Analysis ||talk ||Isik Karahanoglu || ||9:50 - 10:30 ||[[FsTutorial/GroupAnalysisV6.0|Group Analysis Tutorial]] ||tutorial ||staff || ||10:30 - 10:50 ||Multiple Comparisons ||talk ||Isik Karahanoglu || ||10:50 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysisV6.0#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff || ||11:10 - 11:30 ||'''break''' || || || ||11:30 - 12:00 ||FreeSurfer Troubleshooting ||talk ||Emma Boyd || ||12:00 - 13:00 ||[[FsTutorial/TroubleshootingDataV6.0|Troubleshooting Tutorial]] ||tutorial ||staff || ||13:00 - 14:00 ||Quality Checking a Recon ||demo ||Emma Boyd || ||14:00 - 15:30 ||'''Lunch''' ||-- ||-- || ||15:30 - 16:15 ||Longitudinal FreeSurfer see also:'' LongitudinalProcessing '' ||talk ||Anastasia Yendiki || ||16:15 - 16:45 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff || ||TBD ||Barcelona social night ||social activity ||you! || |
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| . Multi-modal integration <<BR>> fMRI <<BR>> Diffusion | ==== Thursday, September 7th - Multimodal Analysis / Diffusion Analysis / fMRI Analysis / MR Acquisition ==== ||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || ||9:00 - 9:30 ||Multi-Modal Integration, Part 1: Registration ||talk ||TBD || ||9:30 - 10:00 ||[[MultiModalTutorialV6.0|Multi-Modal Integration Tutorial, Part 1]] ||tutorial ||staff || ||10:00 - 10:40 ||Introduction to Diffusion MRI ||talk ||Anastasia Yendiki || ||10:40 - 11:25 ||[[FsTutorial/DiffusionV6.0|Diffusion Processing Tutorial]] ||tutorial ||staff || ||11:25 - 11:45 ||'''break''' ||-- ||-- || ||11:45 - 12:35 ||TRActs Constrained by UnderLying Anatomy (TRACULA) ||talk ||Anastasia Yendiki || ||12:35 - 13:35 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || ||13:35 - 13:45 ||Longitudinal TRACULA ||talk ||Anastasia Yendiki || ||13:45 - 15:15 ||'''break''' || || || ||15:15 - 16:15 ||Basics of fMRI Analysis ||talk ||Isik Karahanoglu || |
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| '''Day 4''' will cover: | |
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| . Multi-modal integration <<BR>> Future directions | ==== Friday, September 8th - fMRI Analysis / Multimodal Analysis / Future Directions ==== ||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || ||9:00 - 9:30 ||FSFAST, Part 1: Preprocessing ||talk ||Isik Karahanoglu || ||9:30 - 10:00 ||[[FsFastTutorialV6.0|FSFAST Tutorial, Part 1]] ||tutorial ||staff || ||10:00 - 11:00 ||FSFAST, Part 2: GLM Analysis]] ||talk ||Isik Karahanoglu || ||11:20 - 11:40 ||[[FsFastTutorialV6.0|FSFAST Tutorial, Part 2]] ||tutorial ||staff || ||11:40 - 12:00 ||'''break & evaluation form''' ||-- ||-- || ||12:00 - 12:30 ||Multi-Modal Integration, Part 2: Group Analysis ||talk ||Anastasia Yendiki || ||12:30 - 13:00 ||[[MultiModalTutorialV6.0|Multi-Modal Integration Tutorial, Part 2]] ||tutorial ||staff || ||13:00 - 13:30 ||Future Directions ||talk ||Anastasia Yendiki || |
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| The four days will run roughly from '''9am-5pm''' with the last day ending early (~3pm). Laptops are provided with !FreeSurfer and the tutorial data already installed. Attendees will work in pairs (sharing a laptop). '''The most recent Boston course schedule can be found [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial|here]].''' Please check back for updates. | |
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| Additional topics and more detail on each topic is provided [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#CourseTopics|below]]. | * Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the !FreeSurfer processing stream. <<BR>> ** Indicates an optional talk covering basic/beginner material. |
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| ==== Cost ==== | ==== Cost and Deadlines ==== The fee for the course is €800 for post-doctorates and other researchers. A reduced rate of €500 is available to undergraduate and graduate students (pre-doctorate). MDs, PhDs, and research assistants do not qualify for the student rate. Payment must be submitted as soon as possible to ensure successful registration. The payment deadline is June 30th, 2017 for both payment forms (credit card and bank transfer). In the particular case of bank transfer, once payment has been completed, please send proof of payment to Julieta Pereda (jpereda@red-innova.es) to confirm you your spot. If payment has not been received by the deadline or you have not contacted Julieta by that date, your spot will be opened to the waiting list. You will be contacted by us before we do so. |
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| ==== Deadlines & Accepted Payment Types ==== The Payment deadline is '''February 2, 2017''' for all payment forms except for institutional check. The payment deadline for those sending an institutional check is March 6, 2017 with the expectation that we will be contacted by your financial institution by February 2, 2017 to confirm a check is being issued. As long as there are empty spots in the course, we will accept late registrations (regardless of the payment deadline). If you register after the payment deadline has passed, payment is due immediately. Payment and all questions about payment should sent to Stacey Ladieu (sladieu at martinos dot org). Please Allison (astevens at martinos dot org) on your emails with Stacey so she can update your payment status accordingly. |
Course fees are refundable up to the payment deadline. A €200 fee will be deducted, should you request a refund before July 15th, 2017. After that, you will not receive a refund but you can send someone in your place. |
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| Once you complete and submit the registration form below, you will receive an email confirming your registration. This email will also contain instructions for completing payment through Universitat Pompeu Fabra's event website. If you do not receive an email confirmation, please contact Julieta. | |
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| Questions about payment and registration? Contact Julieta Pereda (jpereda@red-innova.es) Questions about course content? Contact Emma Boyd (eboyd2@mgh.harvard.edu) |
|
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==== Missed Deadlines & Cancellations ==== If payment has not been received by the payment deadline ''or'' in the case of an institutional check, your institution has not contacted Stacey Ladieu (sladieu at martinos dot org) with details of their payment arrangement by that date, your spot will be opened to the waiting list. There is no need to contact us to check whether your payment has gone through - your spot is safe unless ''we'' contact you. Course fees are refundable up to the payment deadline. A $200 fee will be deducted, should you request a refund up to 2 weeks prior to the program. After that, the tuition can be applied to a future program or you can send someone in your place. ## In the case there are less than 40 registrants for the course, the course will be cancelled and the registration fee will be refunded to the registrant. |
|
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| ==== Lecturers ==== * Anastasia Yendiki * Emma Boyd * Isik Karahanoglu |
|
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==== Course Schedule ===== * Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the !FreeSurfer processing stream. <<BR>> ** Indicates an optional talk that covers basic/beginner material. ==== Tuesday, September 5th - Introduction / Single Subject Analysis / ROI Analysis ==== ||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || ||8:30 - 9:00 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Unix_tutorial_zjk.pdf|Intro to Linux for FreeSurfer Users]] ||talk/demo ||Zeke Kaufman || ||9:00 - 9:15 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||Emma Boyd & Lilla Zöllei || ||9:15 - 9:30 ||'''break''' || || || ||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl || ||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve || ||11:10 - 11:30 ||'''break''' || || || ||11:30 - 11:45 ||Freeview demonstration ||[[FsTutorial/FreeviewDemo|demo]] ||Andrew Hoopes|| ||11:45 - 12:15 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] || ||12:15 - 1:15 ||'''Lunch''' [[https://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription?action=AttachFile&do=get&target=CourseMap.jpg|(Suggestions for where to eat)]] ||-- ||-- || ||1:15 - 1:30 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] || ||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Registration & Smoothing]] ||talk ||Lilla Zöllei || ||2:00 - 2:20 ||'''break''' || || || ||2:20 - 3:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.pptx|ROI Analysis]] ||talk ||Doug Greve || ||3:20 - 4:00 ||[[FsTutorial/AnatomicalROIV6.0|ROI Analysis Tutorial]] ||tutorial ||staff || ||4:00 - 4:30 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/IntroMRI.pptx|A Non-physicist's Intro to MR]] ([[http://www.heartvista.com/SpinBench|SpinBench]])'' '' ||talk ||Robert Frost || ||4:30 - 5:00 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs-cloud-presentation.ppt|Running FreeSurfer in the cloud with AWS batch]] ||talk ||Paul Wighton || ==== Wednesday, September 6th - Group Analysis / Longitudinal Analysis / Troubleshooting ==== ||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || ||9:00 - 9:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Copenhagen_Group_Analysis.pptx|Group Analysis]] ||talk ||Emily Lindemer || ||9:50 - 10:30 ||[[FsTutorial/GroupAnalysisV6.0|Group Analysis Tutorial]] ||tutorial ||staff || ||10:30 - 10:50 ||'''break''' || || || ||10:50 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dng.Copenhagen_multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Doug Greve || ||11:10 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysisV6.0#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff || ||11:30 - 11:50 ||QDEC demonstration ||demo ||Doug Greve || ||11:50 - 12:50 ||'''Lunch''' ||-- ||-- || ||12:50 - 1:30 ||[[FsTutorial/QdecGroupAnalysisV6.0|QDEC Tutorial]] ||tutorial ||staff || ||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.troubleshooting.ppt|FreeSurfer Troubleshooting]] ||talk ||Bruce Fischl || ||2:00 - 3:00 ||[[FsTutorial/TroubleshootingDataV6.0|Troubleshooting Tutorial]] ||tutorial ||staff || ||3:00 - 3:20 ||'''break''' || || || ||3:20 - 4:20 ||Quality Checking a Recon ||demo ||Allison Stevens || ||4:20 - 5:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.longitudinal.pptx|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Lilla Zöllei || ||5:05 - 5:35 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff || ||6:30 - ? ||Boston Beer Works ||social activity ||you! || ==== Thursday, September 7th - Multimodal Analysis / Diffusion Analysis / fMRI Analysis / MR Acquisition ==== ||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || ||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part1.pptx|Multi-Modal Integration, Part 1: Registration]] ||talk ||Lilla Zöllei || ||9:30 - 10:00 ||[[MultiModalTutorialV6.0|Multi-Modal Integration Tutorial, Part 1]] ||tutorial ||staff || ||10:00 - 10:15 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/IntroDiffusion.pptx|A Non-Physicist's Intro to Diffusion MRI Physics]] '' '' ||talk ||Robert Frost || ||10:15 - 10:35 ||'''break''' || || || ||10:35 - 11:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Anastasia Yendiki || ||11:15 - 12:00 ||[[FsTutorial/DiffusionV6.0|Diffusion Processing Tutorial]] ||tutorial ||staff || ||12:00 - 1:00 ||'''Lunch''' ||-- ||-- || ||1:00 - 1:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki || ||1:50 - 2:50 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || ||2:50 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|Longitudinal TRACULA]] ||talk ||Anastasia Yendiki || ||3:00 - 3:20 ||'''break''' || || || ||3:20 - 4:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis]] ||talk ||Jon Polimeni || ||4:20 - 4:50 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods]] ||talk ||André van der Kouwe || ##'''The !FreeSurfer Evaluation is [[ https://docs.google.com/spreadsheet/viewform?formkey=dGZKM24xb1NpRDRJOHhwdmxCUm9CbFE6MA|here]]!''' ==== Friday, September 8th - fMRI Analysis / Multimodal Analysis / Future Directions ==== ||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || ||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST, Part 1: Preprocessing]] ||talk ||Doug Greve || ||9:30 - 10:00 ||[[FsFastTutorialV6.0|FSFAST Tutorial, Part 1]] ||tutorial ||staff || ||10:00 - 10:20 ||'''break''' & [[https://docs.google.com/forms/d/e/1FAIpQLSfI5II6j8DdhFS2b69F8NF4vCHNku3rZuFxvi00UUu6bIdtJw/viewform?usp=send_form|Evaluation]] || || || ||10:20 - 11:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST, Part 2: GLM Analysis]] ||talk ||Doug Greve || ||11:20 - 12:00 ||[[FsFastTutorialV6.0|FSFAST Tutorial, Part 2]] ||tutorial ||staff || ||12:00 - 1:00 ||'''Lunch''' ||-- ||-- || ||1:00 - 1:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part2.pptx|Multi-Modal Integration, Part 2: Group Analysis]] ||talk ||Doug Greve || ||1:30 - 2:00 ||[[MultiModalTutorialV6.0|Multi-Modal Integration Tutorial, Part 2]] ||tutorial ||staff || ||2:00 - 2:30 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|An Overview of Registration Methods]] ||talk ||Lilla Zöllei || ||2:30 - 3:00 ||Future Directions ||talk ||Bruce Fischl || ##||2:25 - 2:45 ||Question & Answer Session ||-- ||staff || * Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the !FreeSurfer processing stream. <<BR>> ** Indicates an optional talk covering basic/beginner material. |
Details for the FreeSurfer Course in Barcelona, Spain, September 5-8 2017
This course will be held at Universitat Pompeu Fabra in Barcelona (Roc Boronat, 138, 08018, Barcelona, Spain).
Course organized by BarcelonaBeta Brain Research Center (BBRC) and Universidad Carlos III de Madrid (UC3M) with the support of Universitat Pompeu Fabra (UPF).
Barcelona Course Details
Click on any of the topics below for more information:
Course Schedule
Payment
FAQ
Lecturers
Accommodations
Course Schedule
* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk that covers basic/beginner material.
Tuesday, September 5th - Introduction / Single Subject Analysis / ROI Analysis
Time |
Title |
Type |
Lecturer |
9:00 - 9:30 |
** Intro to Linux for FreeSurfer Users |
talk/demo |
Emma Boyd |
9:30 - 9:45 |
** Intro to FreeSurfer Jargon |
talk |
Emma Boyd |
9:45 - 10:15 |
Introduction to Freesurfer |
talk |
Anastasia Yendiki |
10:15 - 11:25 |
Analyzing the Individual Subject |
talk |
Emma Boyd |
11:25 - 11:45 |
break |
|
|
11:45 - 12:00 |
Freeview demonstration |
Emma Boyd |
|
12:00 - 12:30 |
talk |
Emma Boyd |
|
12:30 - 12:45 |
tutorial |
staff |
|
12:45 - 13:15 |
Surface-based Analysis: Intersubject Registration & Smoothing |
talk |
TBD |
13:15 - 14:45 |
Lunch |
-- |
-- |
14:45 - 15:45 |
ROI Analysis |
talk |
TBD |
15:45 - 16:25 |
tutorial |
staff |
|
16:25 - 16:55 |
** A Non-physicist's Intro to MR |
talk |
Emma Boyd |
Wednesday, September 6th - Group Analysis / Longitudinal Analysis / Troubleshooting
Time |
Title |
Type |
Lecturer |
9:00 - 9:50 |
Group Analysis |
talk |
Isik Karahanoglu |
9:50 - 10:30 |
tutorial |
staff |
|
10:30 - 10:50 |
Multiple Comparisons |
talk |
Isik Karahanoglu |
10:50 - 11:10 |
tutorial |
staff |
|
11:10 - 11:30 |
break |
|
|
11:30 - 12:00 |
FreeSurfer Troubleshooting |
talk |
Emma Boyd |
12:00 - 13:00 |
tutorial |
staff |
|
13:00 - 14:00 |
Quality Checking a Recon |
demo |
Emma Boyd |
14:00 - 15:30 |
Lunch |
-- |
-- |
15:30 - 16:15 |
Longitudinal FreeSurfer see also: LongitudinalProcessing |
talk |
Anastasia Yendiki |
16:15 - 16:45 |
tutorial |
staff |
|
TBD |
Barcelona social night |
social activity |
you! |
Thursday, September 7th - Multimodal Analysis / Diffusion Analysis / fMRI Analysis / MR Acquisition
Time |
Title |
Type |
Lecturer |
9:00 - 9:30 |
Multi-Modal Integration, Part 1: Registration |
talk |
TBD |
9:30 - 10:00 |
tutorial |
staff |
|
10:00 - 10:40 |
Introduction to Diffusion MRI |
talk |
Anastasia Yendiki |
10:40 - 11:25 |
tutorial |
staff |
|
11:25 - 11:45 |
break |
-- |
-- |
11:45 - 12:35 |
TRActs Constrained by UnderLying Anatomy (TRACULA) |
talk |
Anastasia Yendiki |
12:35 - 13:35 |
tutorial |
staff |
|
13:35 - 13:45 |
Longitudinal TRACULA |
talk |
Anastasia Yendiki |
13:45 - 15:15 |
break |
|
|
15:15 - 16:15 |
Basics of fMRI Analysis |
talk |
Isik Karahanoglu |
Friday, September 8th - fMRI Analysis / Multimodal Analysis / Future Directions
Time |
Title |
Type |
Lecturer |
9:00 - 9:30 |
FSFAST, Part 1: Preprocessing |
talk |
Isik Karahanoglu |
9:30 - 10:00 |
tutorial |
staff |
|
10:00 - 11:00 |
FSFAST, Part 2: GLM Analysis]] |
talk |
Isik Karahanoglu |
11:20 - 11:40 |
tutorial |
staff |
|
11:40 - 12:00 |
break & evaluation form |
-- |
-- |
12:00 - 12:30 |
Multi-Modal Integration, Part 2: Group Analysis |
talk |
Anastasia Yendiki |
12:30 - 13:00 |
tutorial |
staff |
|
13:00 - 13:30 |
Future Directions |
talk |
Anastasia Yendiki |
* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk covering basic/beginner material.
Payment
Cost and Deadlines
The fee for the course is €800 for post-doctorates and other researchers. A reduced rate of €500 is available to undergraduate and graduate students (pre-doctorate). MDs, PhDs, and research assistants do not qualify for the student rate. Payment must be submitted as soon as possible to ensure successful registration. The payment deadline is June 30th, 2017 for both payment forms (credit card and bank transfer). In the particular case of bank transfer, once payment has been completed, please send proof of payment to Julieta Pereda (jpereda@red-innova.es) to confirm you your spot. If payment has not been received by the deadline or you have not contacted Julieta by that date, your spot will be opened to the waiting list. You will be contacted by us before we do so.
Course fees are refundable up to the payment deadline. A €200 fee will be deducted, should you request a refund before July 15th, 2017. After that, you will not receive a refund but you can send someone in your place.
Once you complete and submit the registration form below, you will receive an email confirming your registration. This email will also contain instructions for completing payment through Universitat Pompeu Fabra's event website. If you do not receive an email confirmation, please contact Julieta.
Questions about payment and registration? Contact Julieta Pereda (jpereda@red-innova.es) Questions about course content? Contact Emma Boyd (eboyd2@mgh.harvard.edu)
FAQ
How many individuals are accepted into the Barcelona course?
- 60 people
Do postdocs qualify for the student rate?
- No, sorry.
The course is full. Can you register me for the next one?
You can sign up for our course mailing list and you will be notified when registration for the next course opens (that list is here). You can also register for the currently full course to be put on the waiting list for it. This does not however automatically get you a spot in the next course.
Can I get a receipt for the course?
- Sure! Paper receipts will be available on the first day of the course. If you need a receipt or invoice before then to get a check issued or reimbursed, please use the confirmation email you received when you registered for the course.
How do I know if my payment went through?
- Julieta will contact you when payment is received.
Do I get any credits for taking this course?
- No, but we will give you a certificate to prove you took it.
Can I bring my own laptop to work on instead of sharing with someone else?
If any issues arise during the tutorial sessions which are unique to your laptop, we will not be able to troubleshoot those issues for you (it takes staff away from answering general tutorial questions). We strongly discourage using your own laptop instead of the ones we provide. If you insist on working on your laptop, please thoroughly test your installation ahead of time - guidelines for this can be found on the TestingFreeSurfer wiki. It might also be a good idea to try to run all the commands in the tutorials (here).
Accommodations
Details to come.