Diff for "FsTutorial/April2016CourseSchedule"

Differences between revisions 1 and 6 (spanning 5 versions)

FreeSurfer Course, April 4-7

8:00 - 9:30am Registration Desk Open

Monday, April 4th - Introduction / Single Subject Analysis / Troubleshooting

Time	Title	Type	Lecturer
8:30 - 9:00	optional - Unix Tutorial for FreeSurfer Users	talk/tutorial	Zeke Kaufman
9:00 - 9:15	optional - Intro to FreeSurfer Jargon	talk	Allison Stevens & Lilla Zollei
9:15 - 9:30	break
9:30 - 10:00	Introduction to Freesurfer	talk	Bruce Fischl
10:00 - 11:10	Analyzing the Individual Subject	talk	Doug Greve
11:10 - 11:30	break
11:30 - 11:45	Freeview demonstration	demo	Allison Moreau
11:45 - 12:00	Interaction with Individual Subject Data Tutorial	tutorial	staff
12:00 - 1:00	Lunch (Suggestions for where to eat)	--	--
1:00 - 1:45	Interaction with Individual Subject Data Tutorial	tutorial	staff
1:45 - 2:15	FreeSurfer Troubleshooting	talk	Bruce Fischl
2:15 - 2:35	break
2:35 - 3:35	Quality Checking a Recon	demo	Allison Moreau
3:35 - 4:35	Troubleshooting Tutorial	tutorial	staff
4:35 - 5:35	optional - A Non-physicist's Intro to MR SpinBench	talk	Dylan Tisdall

Answers to online questions here

Tuesday, April 5th - Group Analysis / Longitudinal Analysis / ROI Analysis

Time	Title	Type	Lecturer
9:00 - 9:30	optional - Basics of Group Analysis	talk	Emily Lindemer
9:30 - 10:00	Surface-based Analysis: Intersubject Registration & Smoothing	talk	Doug Greve
10:00 - 10:40	Group Analysis	talk	Emily Lindemer
10:40 - 11:00	break
11:00 - 11:40	Group Analysis Tutorial	tutorial	staff
11:40 - 12:00	Multiple Comparisons	talk	Emily Lindemer
12:00 - 1:00	Lunch	--	--
1:00 - 1:20	Multiple Comparisons Tutorial	tutorial	staff
1:20 - 1:40	QDEC demonstration	demo	Martin Reuter
1:40 - 2:20	QDEC Tutorial	tutorial	staff
2:20 - 2:40	break
2:40 - 3:25	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
3:25 - 4:05	Longitudinal Tutorial	tutorial	staff
4:05 - 4:20	break
4:20 - 4:50	ROI Analysis	talk	Doug Greve
4:50 - 5:20	ROI Analysis Tutorial	tutorial	staff
6:15 - ?	Boston Beer Works	social activity	staff

Answers to online questions here

Boston Beer Works location information here and here.
Meet us in front of Building 149 to catch the 6:15pm shuttle bus (it leaves on time!).
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street.
Boston Beer Works will be down that street, on your right. (Shuttles depart every 15 minutes up until 7:15pm and every half hour after that).

Wednesday, April 6th - Multimodal Analysis / fMRI / Diffusion

Time	Title	Type	Lecturer
9:00 - 9:30	Multi-Modal Integration, Part 1	talk	Lilla or Doug?
9:30 - 10:10	Introduction to Diffusion MRI	talk	Anastasia Yendiki
10:10 - 10:40	Diffusion Processing Tutorial	tutorial	staff
10:40 - 10:55	break
10:55 - 11:25	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
11:25 - 12:00	Tracula Tutorial	tutorial	staff
12:00 - 12:15	Longitudinal TRACULA	talk	Anastasia Yendiki
12:15 - 1:15	Lunch	--	--
1:15 - 1:45	optional - A Non-Physicist's Intro to Diffusion MRI Physics	talk	Dylan Tisdall
1:45 - 2:45	Basics of fMRI Analysis	talk	Jon Polimeni
2:45 - 3:05	break & Evaluation
3:05 - 4:15	FSFAST	talk	Doug Greve
4:15 - 5:15	FSFAST Tutorial	tutorial	staff

Answers to online questions here

Thursday, April 7th - Multimodal Analysis / MRI Acquisition Tips / Future Directions

Time	Title	Type	Lecturer
9:00 - 9:30	Multi-Modal Integration, Part 2	talk	Lilla Zollei
9:30 - 10:30	Multi-Modal Integration Tutorial	tutorial	staff
10:30 - 10:50	break
10:50 - 11:20	An Overview of Registration Methods	talk	Lilla Zollei
11:20 - 11:50	MRI Acquisition Methods	talk	Andre van der Kouwe
11:50 - 12:50	Lunch	--	--
12:50 - 1:20	Motion-compensated Neuroanatomical Imaging	talk	Dylan Tisdall
1:20 - 2:00	Future Directions	talk	Bruce Fischl
2:00 - 2:30	Question & Answer session	--	staff

Answers to online questions here

FsTutorial/April2016CourseSchedule (last edited 2016-04-07 10:33:03 by AllisonStevens)

-  ⇤ ← Revision 1 as of 2016-02-17 11:38:16 → 
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+   ← Revision 6 as of 2016-03-24 09:18:46 → ⇥
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-Deletions are marked like this.
+Additions are marked like this.
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-'''!FreeSurfer Course, September 28 - Oct 1'''
+'''!FreeSurfer Course, April 4-7'''
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-==== Monday, September 28th - Introduction / Single Subject Analysis / Troubleshooting ====
+==== Monday, April 4th - Introduction / Single Subject Analysis / Troubleshooting ====
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-||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_bash.ppt|Unix Tutorial for FreeSurfer Users]] ||talk/tutorial ||Allison Moreau ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||Allison Moreau & Lilla Zollei ||
+||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_bash.ppt|Unix Tutorial for FreeSurfer Users]] ||talk/tutorial ||Zeke Kaufman ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||Allison Stevens & Lilla Zollei ||
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-||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Bruce Fischl ||
+||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve ||
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-||11:30 - 11:45 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Lee Tirrell ||
+||11:30 - 11:45 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Allison Moreau ||
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-||2:35 - 3:35 ||Quality Checking a Recon ||demo ||Ani Varjabedian ||
+||2:35 - 3:35 ||Quality Checking a Recon ||demo ||Allison Moreau ||
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+||4:35 - 5:35 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Sep_2015_MRI_Basics.pdf|A Non-physicist's Intro to MR]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' '' ||talk ||Dylan Tisdall ||
-Line 26:
+Line 27:
-==== Tuesday, September 29th - Group Analysis / Longitudinal Analysis / ROI Analysis ====
+==== Tuesday, April 5th - Group Analysis / Longitudinal Analysis / ROI Analysis ====
-Line 28:
+Line 29:
-||9:00 - 9:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Sep_2015_MRI_Basics.pdf|A Non-physicist's Intro to MR]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' '' ||talk ||Dylan Tisdall ||
||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Registration & Smoothing]] ||talk ||Lilla Zollei ||
||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis]] ||talk ||Emily Lindemer ||
+||9:00 - 9:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FS_GLM_Spring2016.ppt|Basics of Group Analysis]] ||talk ||Emily Lindemer ||
||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Registration & Smoothing]] ||talk ||Doug Greve ||
||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ERL.ppt|Group Analysis]] ||talk ||Emily Lindemer ||
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+Line 43:
-||4:20 - 4:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Martin Reuter ||
+||4:20 - 4:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve ||
-Line 51:
+Line 52:
-==== Wednesday, September 30th - Multimodal Analysis / fMRI / Diffusion ====
+==== Wednesday, April 6th - Multimodal Analysis / fMRI / Diffusion ====
-Line 54:
+Line 55:
-||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part1.ppt|Multi-Modal Integration, Part 1]] ||talk ||Lilla Zollei ||
+||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part1.ppt|Multi-Modal Integration, Part 1]] ||talk ||Lilla or Doug? ||
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+Line 66:
-||3:05 - 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk || Natalia Zaretskaya ||
+||3:05 - 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk ||Doug Greve ||
-Line 72:
+Line 73:
-==== Thursday, October 1st - Multimodal Analysis / MRI Acquisition Tips / Future Directions ====
+==== Thursday, April 7th - Multimodal Analysis / MRI Acquisition Tips / Future Directions ====