Diff for "FsTutorial/April2016CourseSchedule"

Differences between revisions 1 and 10 (spanning 9 versions)

FreeSurfer Course, April 4-7

8:00 - 9:30am Registration Desk Open

* Indicates an optional technical talk

Monday, April 4th - Introduction / Single Subject Analysis / Troubleshooting

Time	Title	Type	Lecturer
8:30 - 9:00	optional - Unix Tutorial for FreeSurfer Users	talk/tutorial	Zeke Kaufman
9:00 - 9:15	optional - Intro to FreeSurfer Jargon	talk	Allison Stevens & Lilla Zollei
9:15 - 9:30	break
9:30 - 10:00	Introduction to Freesurfer	talk	Bruce Fischl
10:00 - 11:10	Analyzing the Individual Subject	talk	Doug Greve
11:10 - 11:30	break
11:30 - 11:45	Freeview demonstration	demo	Allison Moreau
11:45 - 12:00	Interaction with Individual Subject Data Tutorial	tutorial	staff
12:00 - 1:00	Lunch (Suggestions for where to eat)	--	--
1:00 - 1:45	Interaction with Individual Subject Data Tutorial	tutorial	staff
1:45 - 2:15	Surface-based Analysis: Intersubject Registration & Smoothing	talk	Doug Greve
2:15 - 2:35	break
2:35 - 3:05	ROI Analysis	talk	Doug Greve
3:05 - 3:45	ROI Analysis Tutorial	tutorial	staff
3:45 - 4:05	* A Non-physicist's Intro to MR SpinBench	talk	Dylan Tisdall
4:05 - 4:35	* MRI Acquisition Methods	talk	Andre van der Kouwe

Answers to online questions here

Tuesday, April 5th - Group Analysis / Longitudinal Analysis / ROI Analysis

Time	Title	Type	Lecturer
9:00 - 9:30	optional - Basics of Group Analysis	talk	Emily Lindemer
9:30 - 10:10	Group Analysis	talk	Emily Lindemer
10:10 - 10:30	break
10:30 - 11:10	Group Analysis Tutorial	tutorial	staff
11:10 - 11:30	Multiple Comparisons	talk	Emily Lindemer
11:30 - 11:50	Multiple Comparisons Tutorial	tutorial	staff
11:50 - 12:50	Lunch	--	--
12:50 - 1:10	QDEC demonstration	demo	Martin Reuter
1:10 - 1:50	QDEC Tutorial	tutorial	staff
1:50 - 2:35	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
2:35 - 2:55	break
2:55 - 3:35	Longitudinal Tutorial	tutorial	staff
9:00 - 9:30	Multi-Modal Integration, Part 1	talk	Lilla
9:30 - 10:30	Multi-Modal Integration Tutorial	tutorial	staff
3:35 - 4:05	* An Overview of Registration Methods	talk	Lilla Zollei
6:15 - ?	Boston Beer Works	social activity	staff

Answers to online questions here

Boston Beer Works location information here and here.
Meet us in front of Building 149 to catch the 6:15pm shuttle bus (it leaves on time!).
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street.
Boston Beer Works will be down that street, on your right. (Shuttles depart every 15 minutes up until 7:15pm and every half hour after that).

Wednesday, April 6th - Multimodal Analysis / fMRI / Diffusion

Time

Title

Type

Lecturer

9:30 - 10:10	Introduction to Diffusion MRI	talk	Anastasia Yendiki
10:10 - 10:40	Diffusion Processing Tutorial	tutorial	staff
10:40 - 10:55	break
10:55 - 11:25	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
11:25 - 12:00	Tracula Tutorial	tutorial	staff
12:00 - 12:15	Longitudinal TRACULA	talk	Anastasia Yendiki
12:15 - 1:15	Lunch	--	--
1:15 - 1:45	optional - A Non-Physicist's Intro to Diffusion MRI Physics	talk	Dylan Tisdall
1:45 - 2:45	Basics of fMRI Analysis	talk	Jon Polimeni
2:45 - 3:05	break & Evaluation
3:05 - 4:15	FSFAST	talk	Doug Greve
4:15 - 5:15	FSFAST Tutorial	tutorial	staff

Answers to online questions here

Thursday, April 7th - Multimodal Analysis / MRI Acquisition Tips / Future Directions

Time	Title	Type	Lecturer
9:00 - 9:30	Multi-Modal Integration, Part 2	talk	Lilla Zollei
9:30 - 10:30	Multi-Modal Integration Tutorial	tutorial	staff
10:30 - 10:50	break

1:45 - 2:15	FreeSurfer Troubleshooting	talk	Bruce Fischl
2:35 - 3:35	Quality Checking a Recon	demo	Allison Moreau
3:35 - 4:35	Troubleshooting Tutorial	tutorial	staff

11:50 - 12:50	Lunch	--	--
12:50 - 1:20	Motion-compensated Neuroanatomical Imaging	talk	Dylan Tisdall
1:20 - 2:00	Future Directions	talk	Bruce Fischl
2:00 - 2:30	Question & Answer session	--	staff

Answers to online questions here

FsTutorial/April2016CourseSchedule (last edited 2016-04-07 10:33:03 by AllisonStevens)

-  ⇤ ← Revision 1 as of 2016-02-17 11:38:16 → 
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+   ← Revision 10 as of 2016-03-25 13:09:59 → ⇥
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-Deletions are marked like this.
+Additions are marked like this.
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-'''!FreeSurfer Course, September 28 - Oct 1'''
+'''!FreeSurfer Course, April 4-7'''
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+Line 7:
-==== Monday, September 28th - Introduction / Single Subject Analysis / Troubleshooting ====
+* Indicates an optional technical talk

==== Monday, April 4th - Introduction / Single Subject Analysis / Troubleshooting ====
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+Line 11:
-||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_bash.ppt|Unix Tutorial for FreeSurfer Users]] ||talk/tutorial ||Allison Moreau ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||Allison Moreau & Lilla Zollei ||
+||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_bash.ppt|Unix Tutorial for FreeSurfer Users]] ||talk/tutorial ||Zeke Kaufman ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||Allison Stevens & Lilla Zollei ||
-Line 12:
+Line 15:
-||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Bruce Fischl ||
+||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve ||
-Line 14:
+Line 17:
-||11:30 - 11:45 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Lee Tirrell ||
+||11:30 - 11:45 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Allison Moreau ||
-Line 18:
+Line 21:
-||1:45 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Bruce Fischl ||
+||1:45 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Registration & Smoothing]] ||talk ||Doug Greve ||
-Line 20:
+Line 23:
-||2:35 - 3:35 ||Quality Checking a Recon ||demo ||Ani Varjabedian ||
||3:35 - 4:35 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
+||2:35 - 3:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve ||
||3:05 - 3:45 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:45 - 4:05 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Sep_2015_MRI_Basics.pdf|A Non-physicist's Intro to MR]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' '' ||talk ||Dylan Tisdall ||
||4:05 - 4:35 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods]] ||talk ||Andre van der Kouwe ||
-Line 26:
+Line 31:
-==== Tuesday, September 29th - Group Analysis / Longitudinal Analysis / ROI Analysis ====
+==== Tuesday, April 5th - Group Analysis / Longitudinal Analysis / ROI Analysis ====
-Line 28:
+Line 33:
-||9:00 - 9:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Sep_2015_MRI_Basics.pdf|A Non-physicist's Intro to MR]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' '' ||talk ||Dylan Tisdall ||
||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Registration & Smoothing]] ||talk ||Lilla Zollei ||
||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis]] ||talk ||Emily Lindemer ||
||10:40 - 11:00 ||'''break''' || ||
||11:00 - 11:40 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||
||11:40 - 12:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Emily Lindemer ||
||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||
||1:00 - 1:20 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||
||1:20 - 1:40 ||QDEC demonstration ||demo ||Martin Reuter ||
||1:40 - 2:20 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||2:20 - 2:40 ||'''break''' || ||
||2:40 - 3:25 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Martin Reuter ||
||3:25 - 4:05 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
||4:05 - 4:20 ||'''break''' || ||
||4:20 - 4:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Martin Reuter ||
||4:50 - 5:20 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
+||9:00 - 9:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FS_GLM_Spring2016.ppt|Basics of Group Analysis]] ||talk ||Emily Lindemer ||
||9:30 - 10:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ERL.ppt|Group Analysis]] ||talk ||Emily Lindemer ||
||10:10 - 10:30 ||'''break''' || ||
||10:30 - 11:10 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||
||11:10 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Emily Lindemer ||
||11:30 - 11:50 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||
||11:50 - 12:50 ||'''Lunch''' ||-- ||-- ||
||12:50 - 1:10 ||QDEC demonstration ||demo ||Martin Reuter ||
||1:10 - 1:50 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||1:50 - 2:35 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Martin Reuter ||
||2:35 - 2:55 ||'''break''' || ||
||2:55 - 3:35 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part1.ppt|Multi-Modal Integration, Part 1]] ||talk ||Lilla  ||
||9:30 - 10:30 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
||3:35 - 4:05 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|An Overview of Registration Methods]] ||talk ||Lilla Zollei ||
-Line 51:
+Line 55:
-==== Wednesday, September 30th - Multimodal Analysis / fMRI / Diffusion ====
+==== Wednesday, April 6th - Multimodal Analysis / fMRI / Diffusion ====
-Line 54:
+Line 58:
-||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part1.ppt|Multi-Modal Integration, Part 1]] ||talk ||Lilla Zollei ||
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+Line 69:
-||3:05 - 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk || Natalia Zaretskaya ||
+||3:05 - 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk ||Doug Greve ||
-Line 72:
+Line 76:
-==== Thursday, October 1st - Multimodal Analysis / MRI Acquisition Tips / Future Directions ====
+==== Thursday, April 7th - Multimodal Analysis / MRI Acquisition Tips / Future Directions ====
-Line 77:
+Line 81:
-||10:50 - 11:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|An Overview of Registration Methods]] ||talk ||Lilla Zollei ||
||11:20 - 11:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods]] ||talk ||Andre van der Kouwe ||
+||1:45 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Bruce Fischl ||
||2:35 - 3:35 ||Quality Checking a Recon ||demo ||Allison Moreau ||
||3:35 - 4:35 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||