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=== MGH, Charlestown Navy Yard, Building 149, Conference Room A === === MGH, Charlestown Navy Yard, Building 114, Room D1 ===
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||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|online practice]] ||tutorial ||Allison Stevens || [[https://docs.google.com/spreadsheet/viewform?formkey=dHoxeWZGZktvSk1PY0laUXhacm9SUVE6MQ| Rate it!]]||
||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk ||Allison Stevens || [[https://docs.google.com/spreadsheet/viewform?formkey=dDF5NU5aYVVVU2tiTkwtWTc2X3JWOGc6MA| Rate it!]]||
||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2011.jpg|staff]] || ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl || [[https://docs.google.com/spreadsheet/viewform?formkey=dEtkaFJpUTRLd3NLSW9GUjFobEx1Qmc6MA| Rate it!]]||
||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve || [[https://docs.google.com/spreadsheet/viewform?formkey=dEdYdm5WaVd3bVdSdU0zMXo1cUdtenc6MA| Rate it!]]||		 ||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|online practice]] ||tutorial ||Allison Stevens ||  ||
||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk ||Allison Stevens || ||
||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2011.jpg|staff]] ||       ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl ||          ||
||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Bruce Fischl || ||
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||10:50 - 11:20 ||Tkmedit/Tksurfer demonstration ||demo ||Doug Greve || [[https://docs.google.com/spreadsheet/viewform?formkey=dEtWdXZZRXdoVnk5ZG1NcnNCZmdZZGc6MA| Rate it!]]||
||11:20 - 11:50 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dFJaZjVXWHlsYUpTaXItLUxJWjlrelE6MA| Rate it!]]||
||11:50 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] ||talk ||Doug Greve || [[https://docs.google.com/spreadsheet/viewform?formkey=dDE5eWlFSmpQR0ZrZEFrQWJLVjZuTnc6MA| Rate it!]]||		 ||10:50 - 11:20 ||Tkmedit/Tksurfer demonstration ||demo ||Doug Greve || ||
||11:20 - 11:50 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff || ||
||11:50 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration|&do=get]] ||talk ||Doug Greve || ||
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||''1:00 - 1:30'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Dec_12_2011_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' ||''Dylan Tisdall'' || [[https://docs.google.com/spreadsheet/viewform?formkey=dGdoMmtpdjc1LXZiSm1JZWsySVBnZ2c6MA| Rate it!]]||
||1:30 - 2:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei || [[https://docs.google.com/spreadsheet/viewform?formkey=dGQzdXhUSGt6N2FwWEIzYm04WkV1eEE6MA| Rate it!]]||
||2:15- 2:55 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk ||Bruce Fischl || [[https://docs.google.com/spreadsheet/viewform?formkey=dEZNdUJSOEhEUE41ZS0wREhjSm02SkE6MA| Rate it!]]||
||2:55 - 3:15 ||'''break''' || || || ||
||3:15 - 3:35 ||Troubleshooting Demonstration || demo || Allison ||[[https://docs.google.com/spreadsheet/viewform?formkey=dFEzNk04U1lLSE1heno3bC1TNmpBRkE6MA| Rate it!]]||
||3:35 - 4:35 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dGZtMXV2cWw1LUZ6WXVzazZkWl8zUGc6MA| Rate it!]]||
||4:35 - 5:30 || Quality Checking a Recon ||demo ||Allison Stevens || [[https://docs.google.com/spreadsheet/viewform?formkey=dFROM0FnOGg2VU5TaTJoOHkxQ3lpeGc6MA|Rate it!]]||
||5:30 - ||'''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] ||one-on-one || staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dFgydlJTRVRLaC1IUG9EeHhSeFpTclE6MA|Rate it!]]||
||5:30 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]] ||one-on-one || staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dEtxNDlDWGRhSjdTd19NZjVQQUVZeUE6MA|Rate it!]]||

'''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<<BR>>
Meet us at 6:40pm at the front of Building 149 (the entrance on the opposite side of the building from where the Course is held). <<BR>>
If you miss us, we are taking the 6:45pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 7pm, 7:15pm, and 7:45pm).
From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.		 ||''1:00 - 1:30'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Dec_12_2011_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' ||''Dylan Tisdall'' || ||
||1:30 - 2:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk ||Bruce Fischl || ||
||2:10 - 2:30 ||Troubleshooting Demonstration || demo || Allison || ||
||2:30 - 2:50 ||'''break''' || || || ||
||2:50 - 3:50 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff || ||
||3:50 - 4:50 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt | Quality Checking a Recon]] ||demo ||Allison Stevens || ||
||5:00 - ||'''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] ||one-on-one || staff || ||
||5:00 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]] ||one-on-one || staff || ||
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||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve || [[https://docs.google.com/spreadsheet/viewform?formkey=dGFhYUVwanFCcFhYeEJPSzIxU0pSeWc6MA| Rate it!]]||
||10:00 - 10:30 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dGQwaXFrVnJxQ1Z2eURhZ1RuR0tnMlE6MA| Rate it!]]||
||10:30 - 10:50 ||'''break''' || || ||
||10:50 - 11:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.pdf|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter || [[https://docs.google.com/spreadsheet/viewform?formkey=dHhCcFFGcHVrdzZmTkR2RFpQSjh3bnc6MA| Rate it!]] ||
||11:20 - 12:10 ||Freeview Demo, [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dGFDd21lOVljSEhnRTM3MWM5SjU3ZGc6MA| Rate it!]]||
||12:10 - 1:10 ||'''Lunch''' ||-- ||-- ||
||''12:40 - 1:10'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' || [[https://docs.google.com/spreadsheet/viewform?formkey=dEJaSDhJeUYycERmQ0hwTWhUVEh1dUE6MA| Rate it!]]||
||1:10 - 1:40 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] ||talk ||Bruce Fischl || [[https://docs.google.com/spreadsheet/viewform?formkey=dGZZQnQwUVIyU0V3SVhaR3Vva1Utbmc6MA| Rate it!]]||
||1:40 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve || [[https://docs.google.com/spreadsheet/viewform?formkey=dHFpd2I5U2ROSjQwSU11N3Z4Tjhmcnc6MA| Rate it!]]||
||2:40 - 3:00 ||'''break''' || || ||
||3:00 - 3:45 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dG1tMHg0M2xMSmZmcjBzVWV3TDZLZ0E6MA| Rate it!]]||
||3:45 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || J. Eugenio Iglesias || [[https://docs.google.com/spreadsheet/viewform?formkey=dHlYOHlFYjQzOENhb3JaOWl4SjRiUVE6MA| Rate it!]]||
||4:45 - 5:15 ||QDEC demonstration ||demo ||Nick Schmansky || [[https://docs.google.com/spreadsheet/viewform?formkey=dDNwZXg5eG1Fc3E1RnJQcDNoM1VRdlE6MA| Rate it!]]||
||5:15 - 6:15 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dEJaWVhJbkFDUm1iUU9hcmdNWWxjaXc6MA| Rate it! ]]||
||5:15 - 6:15 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dDlpa05FZlZCLUh5N0U0U0JlVkxFQlE6MA| Rate it!]]||		 ||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve || ||
||9:40 - 10:10 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff || ||
||10:10 - 10:30 ||'''break''' || || ||
||10:30 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || J. Eugenio Iglesias || ||
||11:30 - 11:50 ||QDEC demonstration ||demo ||Nick Schmansky || ||
||11:50 - 12:50 ||'''Lunch''' ||-- ||-- ||
||''12:20 - 12:50'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' || ||
||12:50 - 1:50 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff || ||
||12:50 - 1:50 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff || ||
||1:50 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter || ||
||2:20 - 2:40 ||'''break''' || || ||
||2:40 - 3:40 ||Freeview Demo, [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff || ||
||3:40 - 4:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve || ||
||4:40 - 5:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei || ||
||5:00 - 5:45 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff || ||
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'''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<<BR>>
Meet us at 6:10pm at the front of Building 149 (map to be provided soon). <<BR>>
If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
<<BR>>From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.
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[[https://docs.google.com/spreadsheet/viewform?formkey=dHVDa09yN0g1VHQzRGlEdTdiQU1xZFE6MA |The Course Evaluation has been posted. ]] Please feel free to start filling it out! ##[[https://docs.google.com/spreadsheet/viewform?formkey=dHVDa09yN0g1VHQzRGlEdTdiQU1xZFE6MA |The Course Evaluation has been posted. ]] Please feel free to start filling it out!
**''For those not interested in fMRI and/or Diffusion processing, there may be the option of meeting with a !FreeSurfer staff member during the talks below. <<BR>>These one-on-one sessions can be used to get feedback on your data and/or your analysis. Sign-up for these sessions will occur a week or so before the course date.
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||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fmri.april2011.pdf|Basics of fMRI Analysis|&do=get]] ||talk || Jon Polimeni || [[https://docs.google.com/spreadsheet/viewform?formkey=dGpsTlZaa2pNRWxacnRHQnk0MG9IUVE6MA| Rate it!]]||
||10:00 - 10:20 ||'''break''' || || ||
||10:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve || [[https://docs.google.com/spreadsheet/viewform?formkey=dHZCWlpYcU8tWGNtdHJIRmc3VjlMMUE6MA| Rate it!]]||
||11:40 - 12:40 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff || [[ https://docs.google.com/spreadsheet/viewform?formkey=dHBXU2FQMVJjVndjNjI4S1hhYmpkWkE6MA| Rate it!]]||		 ||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis|&do=get]] ||talk || Jon Polimeni ||            ||
||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve || ||
||10:40 - 11:00 ||'''break''' || || ||
||11:00 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] continued ||talk ||Doug Greve ||             ||
||11:40 - 12:40 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff ||            ||
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||''1:10 - 1:40'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Dec_14_2011_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' || [[https://docs.google.com/spreadsheet/viewform?formkey=dFNGWE1wUjlwczVNWGJMYnpjUDRfSVE6MA| Rate it!]]||
||1:40 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki || [[https://docs.google.com/spreadsheet/viewform?formkey=dGZYT201c1FlZzZtNzBfVDMyZl85cEE6MA| Rate it!]]||
||2:40 - 3:25 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dHVnRmI0eTZOZDdxX3hPRjZjaE5USVE6MA| Rate it!]]||
||3:25 - 3:45 ||'''break''' & [[https://docs.google.com/spreadsheet/viewform?formkey=dHVDa09yN0g1VHQzRGlEdTdiQU1xZFE6MA | Evaluation]] || || ||
||3:45 - 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki || [[https://docs.google.com/spreadsheet/viewform?formkey=dEl6ZS1fT0ZpMkNfVHZEcnVfUjBBT2c6MA| Rate it!]]||
||4:15 - 5:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dERyMFBoZUNfTkpXZ1JpLVJyWVN1S2c6MA| Rate it!]]||
||5:00 - 5:30 ||Question and Answer Session, FsQuiz ||talk ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dHJfWkd4QXNqTU42dThJQzAzNHAycHc6MA| Rate it! ]]||		 ||''1:10 - 1:40'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Dec_14_2011_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' ||             ||
||1:40 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki ||              ||
||2:20 - 2:50 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||                      ||
||2:50 - 3:10 ||'''break''' & Evaluation || || ||
||3:10 - 3:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki ||              ||
||3:40 - 4:25 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||                  ||
||4:25 - 5:00 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] ||talk ||Bruce Fischl || ||
||5:00 - 5:30 ||Question and Answer Session, FsQuiz ||talk ||staff ||                    ||

FreeSurfer Course, April 2-4, 2012

MGH, Charlestown Navy Yard, Building 114, Room D1

Monday, April 2nd - Introduction / Single Subject / Registration / Troubleshooting

Time

Title

Type

Lecturer

Give us your feedback

8:00 - 8:30

optional - Unix Tutorial for FreeSurfer Users online practice

tutorial

Allison Stevens

8:30 - 9:00

optional - Intro to FreeSurfer Jargon

talk

Allison Stevens

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Introduction to Freesurfer

talk

Bruce Fischl

9:30 - 10:30

Analyzing the Individual Subject

talk

Bruce Fischl

10:30 - 10:50

break

10:50 - 11:20

Tkmedit/Tksurfer demonstration

demo

Doug Greve

11:20 - 11:50

Interaction with Individual Subject Data Tutorial

tutorial

staff

11:50 - 12:30

Surface-based Analysis: Intersubject Smoothing & Registration

talk

Doug Greve

12:30 - 1:30

Lunch (Suggestions for where to eat)

--

--

1:00 - 1:30

Optional Lunch Talk- A Non-physicist's Intro to MR SpinBench

talk

Dylan Tisdall

1:30 - 2:10

Failure Modes

talk

Bruce Fischl

2:10 - 2:30

Troubleshooting Demonstration

demo

Allison

2:30 - 2:50

break

2:50 - 3:50

Troubleshooting Tutorial

tutorial

staff

3:50 - 4:50

Quality Checking a Recon

demo

Allison Stevens

5:00 -

optional - FreeSurfer Installation on Personal Laptops

one-on-one

staff

5:00 -

optional - Start Processing Your Own Data

one-on-one

staff

Tuesday, April 3rd - ROIs / Longitudinal / Multimodal / Group Analysis

Time

Title

Type

Lecturer

Give us your feedback

9:00 - 9:40

ROI Analysis

talk

Doug Greve

9:40 - 10:10

ROI Analysis Tutorial

tutorial

staff

10:10 - 10:30

break

10:30 - 11:30

Group Analysis / GLM / Multiple Comparisons

talk

J. Eugenio Iglesias

11:30 - 11:50

QDEC demonstration

demo

Nick Schmansky

11:50 - 12:50

Lunch

--

--

12:20 - 12:50

Optional Lunch Talk- MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

12:50 - 1:50

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

12:50 - 1:50

Group Analysis - qdec Tutorial

tutorial

staff

1:50 - 2:20

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

2:20 - 2:40

break

2:40 - 3:40

Freeview Demo, Longitudinal Tutorial

tutorial

staff

3:40 - 4:40

Multi-Modal Integration

talk

Doug Greve

4:40 - 5:00

Registration Methods

talk

Lilla Zollei

5:00 - 5:45

Multi-Modal Integration Tutorial

tutorial

staff

Boston Beer Works location information here and here.
Meet us at 6:10pm at the front of Building 149 (map to be provided soon).
If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.

Wednesday, April 4th - fMRI / Diffusion / Q&A

**For those not interested in fMRI and/or Diffusion processing, there may be the option of meeting with a FreeSurfer staff member during the talks below.
These one-on-one sessions can be used to get feedback on your data and/or your analysis. Sign-up for these sessions will occur a week or so before the course date.

Time

Title

Type

Lecturer

Give us your feedback

9:00 - 10:00

Basics of fMRI Analysis

talk

Jon Polimeni

10:00 - 10:40

FSFAST

talk

Doug Greve

10:40 - 11:00

break

11:00 - 11:40

FSFAST continued

talk

Doug Greve

11:40 - 12:40

FSFAST Tutorial

tutorial

staff

12:40 - 1:40

Lunch

--

--

1:10 - 1:40

Optional Lunch Talk- Motion-compensated neuroanatomical imaging

talk

Dylan Tisdall

1:40 - 2:20

Introduction to Diffusion MRI

talk

Anastasia Yendiki

2:20 - 2:50

Diffusion Processing Tutorial

tutorial

staff

2:50 - 3:10

break & Evaluation

3:10 - 3:40

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

3:40 - 4:25

Tracula Tutorial

tutorial

staff

4:25 - 5:00

Future Directions: Inferring architectonic boundaries from in-vivo MRI

talk

Bruce Fischl

5:00 - 5:30

Question and Answer Session, FsQuiz

talk

staff

FsTutorial/April2012CourseSchedule (last edited 2012-04-04 14:22:41 by AllisonStevens)