Differences between revisions 33 and 40 (spanning 7 versions)
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Editor: PratapKunwar
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Editor: PratapKunwar
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== Analysis == == PreAnalysis ==
 1. FsFastUnpackData
 1. FsFastLinkAnatData
 1. FsFastCreateParadigmFile
 1. FsFastPreprocessData
 1. FsFastRegisterToStructural
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 * FsFastIndividualAnalysis
 * FsFastIndividualRetinotopyAnalysis
 * FsFastAbBlockedAnalysis		  1. FsFastFirstLevelAnalysis
 1. FsFastComputeIndividualStatistics
 1. FsFastVisualizeIndividualVolume
 1. FsFastVisualizeIndividualSurface
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 * GroupAnalysisOverview
 * Volume-based(MNI305/fsaverage)GroupAnalysis		  * FsFastGroupAnalysisOverview
 * FsFastVolumeBasedGroupAnalysis
 * FsFastSurfaceBasedGroupAnalysis
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=== GroupAnalysis === === GroupVolumeAnalysis ===
 * AssembleData (isxconcat-sess)
 * GlmAnalysis (mri_glmfit)

=== GroupSurfaceAnalysis ===

   1. Assemble the Data (Volume)
   2. Quality Assurance (Volume)
   3. Group (Volume)
         1. Random Effects (RFx, OLS) (Volume)
         2. Weighted Random Effects (WRFx, WLS) (Volume)
         3. Fixed Effects (FFx) (Volume)
   4. Output and visualization (Volume)
   5. Correction for Multiple Comparisons/Cluster Analysis (Volume)

=== MISC (old) ===
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=== InterGroupComparison ===
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 * FsFastIndividualAnalysis
 * FsFastIndividualRetinotopyAnalysis
 * FsFastAbBlockedAnalysis

[wiki:FreeSurferWiki top]

FS-Fast Work Flows

Overview and Data Hierarchy

PreAnalysis

  1. FsFastUnpackData

  2. FsFastLinkAnatData

  3. FsFastCreateParadigmFile

  4. FsFastPreprocessData

  5. FsFastRegisterToStructural

First-Level (Individual)Analysis

  1. FsFastFirstLevelAnalysis

  2. FsFastComputeIndividualStatistics

  3. FsFastVisualizeIndividualVolume

  4. FsFastVisualizeIndividualSurface

Higher-Level (Group) Analysis

GroupVolumeAnalysis

GroupSurfaceAnalysis

  1. Assemble the Data (Volume)
  2. Quality Assurance (Volume)
  3. Group (Volume)
    1. Random Effects (RFx, OLS) (Volume)
    2. Weighted Random Effects (WRFx, WLS) (Volume)
    3. Fixed Effects (FFx) (Volume)
  4. Output and visualization (Volume)
  5. Correction for Multiple Comparisons/Cluster Analysis (Volume)

MISC (old)

FsFastWorkFlows (last edited 2011-01-13 18:01:10 by TylerTriggs)