Differences between revisions 10 and 40 (spanning 30 versions)
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Editor: DavidTuch
Comment: Added InterGroup.
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Editor: PratapKunwar
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FsFastWorkFlows contains a list of available processing streams for FsFast. The FsFastWorkFlows include:
 
 * [wiki:/IndividualVolumeAnalysis IndividualVolumeAnalysis]
 * [wiki:/IndividualSurfaceAnalysis IndividualSurfaceAnalysis]		 [wiki:Self:FreeSurferWiki top]
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 * [wiki:/GroupVolumeRandomEffectsAnalysis GroupVolumeRandomEffectsAnalysis]
 * [wiki:/GroupSurfaceRandomEffectsAnalysis GroupSurfaceRandomEffectsAnalysis]		 = FS-Fast Work Flows =
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 * [wiki:/InterGroupVolumeComparison InterGroupVolumeComparison]
 * [wiki:/InterGroupSurfaceComparison InterGroupSurfaceComparison]
 
 * [wiki:/InterGroupVolumeROIComparison InterGroupVolumeROIComparison]
 * [wiki:/InterGroupSurfaceROIComparison InterGroupSurfaceROIComparison]		  * FsFastAnlysisBySteps

== Overview and Data Hierarchy ==

 * FsFastOverview

== PreAnalysis ==
 1. FsFastUnpackData
 1. FsFastLinkAnatData
 1. FsFastCreateParadigmFile
 1. FsFastPreprocessData
 1. FsFastRegisterToStructural

=== First-Level (Individual)Analysis ===
 1. FsFastFirstLevelAnalysis
 1. FsFastComputeIndividualStatistics
 1. FsFastVisualizeIndividualVolume
 1. FsFastVisualizeIndividualSurface

=== Higher-Level (Group) Analysis ===
 * FsFastGroupAnalysisOverview
 * FsFastVolumeBasedGroupAnalysis
 * FsFastSurfaceBasedGroupAnalysis

=== GroupVolumeAnalysis ===
 * AssembleData (isxconcat-sess)
 * GlmAnalysis (mri_glmfit)

=== GroupSurfaceAnalysis ===

   1. Assemble the Data (Volume)
   2. Quality Assurance (Volume)
   3. Group (Volume)
         1. Random Effects (RFx, OLS) (Volume)
         2. Weighted Random Effects (WRFx, WLS) (Volume)
         3. Fixed Effects (FFx) (Volume)
   4. Output and visualization (Volume)
   5. Correction for Multiple Comparisons/Cluster Analysis (Volume)

=== MISC (old) ===

 * FsFastGroupVolumeRandomEffectsAnalysis
 * FsFastGroupSurfaceRandomEffectsAnalysis

 * FsFastGroupVolumeFixedEffectsAnalysis
 * FsFastGroupSurfaceFixedEffectsAnalysis

 * FsFastGroupVolumeRoiAnalysis
 * FsFastGroupSurfaceRoiAnalysis

 * FsFastInterGroupVolumeComparison
 * FsFastInterGroupSurfaceComparison

 * FsFastIndividualAnalysis
 * FsFastIndividualRetinotopyAnalysis
 * FsFastAbBlockedAnalysis

[wiki:FreeSurferWiki top]

FS-Fast Work Flows

Overview and Data Hierarchy

PreAnalysis

  1. FsFastUnpackData

  2. FsFastLinkAnatData

  3. FsFastCreateParadigmFile

  4. FsFastPreprocessData

  5. FsFastRegisterToStructural

First-Level (Individual)Analysis

  1. FsFastFirstLevelAnalysis

  2. FsFastComputeIndividualStatistics

  3. FsFastVisualizeIndividualVolume

  4. FsFastVisualizeIndividualSurface

Higher-Level (Group) Analysis

GroupVolumeAnalysis

GroupSurfaceAnalysis

  1. Assemble the Data (Volume)
  2. Quality Assurance (Volume)
  3. Group (Volume)
    1. Random Effects (RFx, OLS) (Volume)
    2. Weighted Random Effects (WRFx, WLS) (Volume)
    3. Fixed Effects (FFx) (Volume)
  4. Output and visualization (Volume)
  5. Correction for Multiple Comparisons/Cluster Analysis (Volume)

MISC (old)

FsFastWorkFlows (last edited 2011-01-13 18:01:10 by TylerTriggs)