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- WorkFlows . . . 2 matches
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= WorkFlows =
The FreeSurfer tools, and brain image processing tools in general, are best understood in the context of a wo...
- BasicReconstruction . . . 2 matches
- ...[[FreeSurferWorkFlows|top]] | [[FreeSurferWorkFlows|previous]] | [[RecommendedReconstruction|next]]
This workflow completes the entire reconstruction process without stopping. S...
- ToolsAndCommands . . . 1 match
- ...s|GUI applications]]
* [[FreeSurferCommands|Command-line tools]]
* see also [[FreeSurferWorkFlows|work-flows]] and [[FreeSurferTutorial|tutorial]]
== 2. FS-Fast ==
* [[FsFast...
- SubcorticalSegmentation . . . 1 match
- ...[[FreeSurferWorkFlows|top]]
= Subcortical Segmentation =
In automatic subcortical segmentation, each voxel in the normalized brain volume is assigned one of about 40 labels, inc...
- RecommendedReconstruction . . . 1 match
- ...
[[FreeSurferWorkFlows|top]] | [[BasicReconstruction|previous]] | [[HistoricalReconstruction|next]]
Although the reconstruction process is broken down into three different stages...
- JoshSnyder . . . 1 match
- ...
||'''Authored:''' || FreeDiffusionVisualizer ||
||'''WorkFlows used:''' || FreeSurferWorkFlows, FsFastWorkFlows, FreeDiffusionWorkFlows ||
||'''Tools used:''' || ||
||<<BR>...
- JorgeJovicich . . . 1 match
- ...eally ||
## ||'''Authored:''' || Programs ||
||'''WorkFlows used:''' || FreeSurferWorkFlows ||
||'''Tools used:''' || FreeSurfer ||
|| <<BR>> || <<BR>> ...
- HistoricalReconstruction . . . 1 match
- ...[[FreeSurferWorkFlows|top]] | [[RecommendedReconstruction|previous]] | [[SubcorticalSegmentation|next]]
This workflow uses the older version of FreeSurfer, in which manual editin...
- FsTutorial/MorphAndRecon . . . 1 match
- ...es that follow. You can find further instructions on the recommended and other FreeSurferWorkFlows under the workflow section of the wiki. For a listing of the individual flags ...
- FreeSurfer . . . 1 match
- ...rtical brain structures and much more ...
* FreeSurferAnalysisPipelineOverview
* FreeSurferBeginnersGuide
* FreeSurferWorkFlows
* FreeSurferApplications
* FreeSurferCommands...