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| FreeSurferWorkFlows describes processing workflows for !FreeSurfer. An overview of the major processing steps taking place in a standard !FreeSurfer workflow are described in this PDF slide presentation: [[http://surfer.nmr.mgh.harvard.edu/docs/ftp/pub/docs/freesurfer.intro.2007.pdf|Building Anatomical Models with Freesurfer]], and also FreeSurferAnalysisPipelineOverview. | FreeSurferWorkFlows describes processing workflows for !FreeSurfer. An overview of the major processing steps taking place in a standard !FreeSurfer workflow are described in this PDF slide presentation: [[http://surfer.nmr.mgh.harvard.edu/docs/ftp/pub/docs/freesurfer.intro.pdf|Building Anatomical Models with Freesurfer]], and also FreeSurferAnalysisPipelineOverview. |
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| For more detail you can view the [[FsTutorial/MorphAndRecon|Morphometry and Reconstruction section]] of the FsTutorial. | For more detail on how to use !FreeSurfer, look through the tutorials we offer on the FsTutorial page. |
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| * LongitudinalProcessing |
FreeSurfer Work Flows
FreeSurferWorkFlows describes processing workflows for FreeSurfer. An overview of the major processing steps taking place in a standard FreeSurfer workflow are described in this PDF slide presentation: Building Anatomical Models with Freesurfer, and also FreeSurferAnalysisPipelineOverview.
For more detail on how to use FreeSurfer, look through the tutorials we offer on the FsTutorial page.
FreeSurferWorkFlows include:
RecommendedReconstruction (with routine checks for automated program failures, and subsequent manual intervention)