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← Revision 57 as of 2011-07-05 13:39:53 ⇥
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| [wiki:Self:FreeSurferWiki top] | [wiki:Self:WorkFlows previous] | [wiki:Self:BasicReconstruction next] | [[FreeSurferWiki|top]] | [[WorkFlows|previous]] | [[BasicReconstruction|next]] |
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| FreeSurferWorkFlows describes processing workflows for FreeSurfer. FreeSurferWorkFlows includes: | FreeSurferWorkFlows describes processing workflows for !FreeSurfer. An overview of the major processing steps taking place in a standard !FreeSurfer workflow are described in this PDF slide presentation: [[http://surfer.nmr.mgh.harvard.edu/docs/ftp/pub/docs/freesurfer.intro.pdf|Building Anatomical Models with Freesurfer]], and also FreeSurferAnalysisPipelineOverview. |
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| Recommended: * BasicReconstruction (fully automated) * TroubleshootingReconstruction (if the automated programs fail, manual intervention required) * HistoricalReconstruction (semi-automated, with routine use of manual edits to segmented white matter volume) * SubcorticalSegmentation (already included in Basic workflow, but must be done separately if using Historical workflow) |
For more detail on how to use !FreeSurfer, look through the tutorials we offer on the FsTutorial page. |
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| Use the Basic workflow if you are starting to process data. Use the Historic workflow if you have already processed large amounts of data using previous versions of FreeSurfer which required manual edits, and you do not wish to reprocess them with the Basic workflow. IMPORTANT: Whichever workflow you choose to use, you will need to process all your data with that same workflow. |
FreeSurferWorkFlows include: |
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| User Contributed: * FreeSurferAnatomicalReconstruction |
* FsFastUnpackData * RecommendedReconstruction (with routine checks for automated program failures, and subsequent manual intervention) * LongitudinalProcessing * FreeSurferGroupAnalysis |
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| * FreeSurferIndividualAnalysis * FreeSurferGroupAnalysis * FreeSurferRemoteAccess |
* VolumeRoiCorticalThickness * PairedAnalysis |
FreeSurfer Work Flows
FreeSurferWorkFlows describes processing workflows for FreeSurfer. An overview of the major processing steps taking place in a standard FreeSurfer workflow are described in this PDF slide presentation: Building Anatomical Models with Freesurfer, and also FreeSurferAnalysisPipelineOverview.
For more detail on how to use FreeSurfer, look through the tutorials we offer on the FsTutorial page.
FreeSurferWorkFlows include:
RecommendedReconstruction (with routine checks for automated program failures, and subsequent manual intervention)