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| FreeSurferWorkFlows describes processing workflows for FreeSurfer. FreeSurferWorkFlows includes: | [[FreeSurferWiki|top]] | [[WorkFlows|previous]] | [[BasicReconstruction|next]] |
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| * [wiki:/FreeSurferWorkFlows/StructuralAnalysis StructuralAnalysis] * [wiki:/FreeSurferWorkFlows/FunctionalAnalysis FunctionalAnalysis] * [wiki:/FreeSurferWorkFlows/DiffusionAnalysis DiffusionAnalysis] |
= FreeSurfer Work Flows = |
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| FreeSurferWorkFlows describes processing workflows for !FreeSurfer. An overview of the major processing steps taking place in a standard !FreeSurfer workflow are described in this PDF slide presentation: [[http://surfer.nmr.mgh.harvard.edu/docs/ftp/pub/docs/FSL_anatomical_stream.pdf|Building Anatomical Models with Freesurfer]], and also FreeSurferAnalysisPipelineOverview. For more detail you can view the [[FsTutorial/MorphAndRecon|Morphometry and Reconstruction section]] of the FsTutorial. FreeSurferWorkFlows include: * RecommendedReconstruction (with routine checks for automated program failures, and subsequent manual intervention) * FreeSurferGroupAnalysis * FreeSurferOccipitalFlattenedPatch * VolumeRoiCorticalThickness * PairedAnalysis |
FreeSurfer Work Flows
FreeSurferWorkFlows describes processing workflows for FreeSurfer. An overview of the major processing steps taking place in a standard FreeSurfer workflow are described in this PDF slide presentation: Building Anatomical Models with Freesurfer, and also FreeSurferAnalysisPipelineOverview.
For more detail you can view the Morphometry and Reconstruction section of the FsTutorial.
FreeSurferWorkFlows include:
RecommendedReconstruction (with routine checks for automated program failures, and subsequent manual intervention)