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 * Welcome to the FreeSurferWiki. The FreeSurferWiki provides a documentation forum for investigators at the MartinosCenter for Biomedical Imaging, and for the !FreeSurfer user community at-large.  * Welcome to the FreeSurferWiki. The FreeSurferWiki is the central documentation source for FreeSurfer.
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 * To gain access to the Wiki to make additions or improvements, see GettingAccess. Once you have access, see the WikiBeginnersGuide to get started.  * Please see the FreeSurferBeginnersGuide to get started.
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 * Most of the Wiki is publicly readable, and is the central source for !FreeSurfer usage documentation. Be sure to see the FreeSurferBeginnersGuide.  * If you would like to contribute to the Wiki you will need a WikiUserName. Please see GettingAccess to obtain a WikiUserName.
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 * Please feel free to email [[MailTo(fswiki DASH help AT nmr DOT mgh DOT harvard DOT edu, fswiki-help)]] if you have any questions or encounter any difficulties with this Wiki. General questions about !FreeSurfer should be directed to the [[MailTo(freesurfer AT nmr DOT mgh DOT harvard DOT edu, freesurfer mailing list)]]. Bugs reports should be directed to the [[MailTo(analysis-bugs AT nmr DOT mgh DOT harvard DOT edu, analysis-bugs mailing list)]].  * General questions about !FreeSurfer, and this Wiki, should be directed to the [[MailTo(freesurfer AT nmr DOT mgh DOT harvard DOT edu, freesurfer mailing list)]]. Bugs reports should be directed to the [[MailTo(analysis-bugs AT nmr DOT mgh DOT harvard DOT edu, analysis-bugs mailing list)]].  Consult FreeSurferSupport for mailing lists and other helplines.
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= Feedback =
 * The FreeSurfer development team values your feedback. Please take a moment to visit the ["Priorities"] page and register your priority. Thanks.
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 * !FreeSurfer is brought to you by [http://www.cortechs.net CorTechs], [http://crisp.cit.nih.gov/crisp/CRISP_LIB.getdoc?textkey=6641264&p_grant_num=5P41RR014075-05&p_query=&ticket=10459360&p_audit_session_id=48433183&p_keywords= NCRR/P41RR14075], R01 RR16594-01A1, and our ["Contributors"].  * !FreeSurfer is brought to you by [http://www.cortechs.net CorTechs], [http://crisp.cit.nih.gov/crisp/CRISP_LIB.getdoc?textkey=6641264&p_grant_num=5P41RR014075-05&p_query=&ticket=10459360&p_audit_session_id=48433183&p_keywords= NCRR/P41RR14075], [http://crisp.cit.nih.gov/crisp/CRISP_LIB.getdoc?textkey=6936484&p_grant_num=5R01RR01659404&p_query=&ticket=16737375&p_audit_session_id=78570196&p_keywords= R01 RR16594-01A1], and our ["Contributors"].

Welcome

Software

Documentation

  • WorkFlows - Information on the how the FreeSurfer tools are used in a processing stream.

  • ArticlesSlidesAndPosters - Background describing the techniques used in the FreeSurfer tools, and their usage in research.

  • ["Tutorials"] - A walk-through of a FreeSurfer work-flow, covering editing and troubleshooting techniques in-depth, as well as a group study example.

  • ["ToolsAndCommands"] - GUI and command-line tool documentation.

  • FileFormats - Description of native FreeSurfer file formats, as well as external file formats used by FreeSurfer.

  • CoordinateSystems - Details on the voxel and RAS coordinate systems used in FreeSurfer.

  • DevelopersGuide - Information for developers of the FreeSurfer code-base (Martinos Center internal).

Support

  • FreeSurferSupport - Mailing lists and helplines which provide user support for FreeSurfer

WikiGuidelines

BeginnersGuides

Feedback

  • The FreeSurfer development team values your feedback. Please take a moment to visit the ["Priorities"] page and register your priority. Thanks.

Acknowledgements

FreeSurferWiki (last edited 2023-06-14 23:16:55 by buildqa)