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| * Welcome to the FreeSurferWiki. The FreeSurferWiki provides a documentation forum for investigators at the MartinosCenter for Biomedical Imaging and for the !FreeSurfer user community at-large. | * Welcome to the FreeSurferWiki. The FreeSurferWiki provides a documentation forum for investigators at the MartinosCenter for Biomedical Imaging, and for the !FreeSurfer user community at-large. |
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| * Please feel free to email [[MailTo(fswiki DASH help AT nmr DOT mgh DOT harvard DOT edu, fswiki-help)]] if you have any questions or encounter any difficulties with this Wiki. General questions about !FreeSurfer should be directed to [[MailTo(freesurfer AT nmr DOT mgh DOT harvard DOT edu, freesurfer)]]. | * Please feel free to email [[MailTo(fswiki DASH help AT nmr DOT mgh DOT harvard DOT edu, fswiki-help)]] if you have any questions or encounter any difficulties with this Wiki. General questions about !FreeSurfer should be directed to the [[MailTo(freesurfer AT nmr DOT mgh DOT harvard DOT edu, freesurfer mailing list)]]. Bugs reports should be directed to the [[MailTo(analysis-bugs AT nmr DOT mgh DOT harvard DOT edu, analysis-bugs mailing list)]]. |
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| * [wiki:Self:FreeSurferDistributions Download and Install] | * [wiki:Self:DownloadAndInstall !FreeSurfer download and install] |
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| * FreeSurferDistributions - Description of FreeSurfer distributions | |
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| * ["Tutorials"] - A walk-through of the recommended FreeSurfer work-flow, covering troubleshooting techniques in-depth. | * ["Tutorials"] - A walk-through of a FreeSurfer work-flow, covering editing and troubleshooting techniques in-depth. |
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| * CoordinateSystems - Details on the voxel and RAS coordinate systems used by FreeSurfer. | * CoordinateSystems - Details on the voxel and RAS coordinate systems used in FreeSurfer. |
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| FreeSurfer is brought to you by [http://www.cortechs.net CorTechs], [http://crisp.cit.nih.gov/crisp/CRISP_LIB.getdoc?textkey=6641264&p_grant_num=5P41RR014075-05&p_query=&ticket=10459360&p_audit_session_id=48433183&p_keywords= NCRR/P41RR14075], R01 RR16594-01A1, and our ["Contributors"]. | * FreeSurfer is brought to you by [http://www.cortechs.net CorTechs], [http://crisp.cit.nih.gov/crisp/CRISP_LIB.getdoc?textkey=6641264&p_grant_num=5P41RR014075-05&p_query=&ticket=10459360&p_audit_session_id=48433183&p_keywords= NCRR/P41RR14075], R01 RR16594-01A1, and our ["Contributors"]. |
Welcome
Welcome to the FreeSurferWiki. The FreeSurferWiki provides a documentation forum for investigators at the MartinosCenter for Biomedical Imaging, and for the FreeSurfer user community at-large.
To gain access to the Wiki to make additions or improvements, see GettingAccess. Once you have access, see the WikiBeginnersGuide to get started.
Most of the Wiki is publicly readable, and is the central source for FreeSurfer usage documentation. Be sure to see the FreeSurferBeginnersGuide.
Please feel free to email MailTo(fswiki DASH help AT nmr DOT mgh DOT harvard DOT edu, fswiki-help) if you have any questions or encounter any difficulties with this Wiki. General questions about FreeSurfer should be directed to the MailTo(freesurfer AT nmr DOT mgh DOT harvard DOT edu, freesurfer mailing list). Bugs reports should be directed to the MailTo(analysis-bugs AT nmr DOT mgh DOT harvard DOT edu, analysis-bugs mailing list).
Software
[wiki:DownloadAndInstall FreeSurfer download and install]
[wiki:InternalFreeSurferDistributions Information for internal (Martinos Center) users]
[wiki:FtpFileExchange Information on FTP file exchange]
[wiki:RemoteAccess Information on remote access]
Documentation
FreeSurferDistributions - Description of FreeSurfer distributions
WorkFlows - Information on the how the FreeSurfer tools are used in a processing stream.
["Articles"] - Background describing the techniques used in the FreeSurfer tools.
["Tutorials"] - A walk-through of a FreeSurfer work-flow, covering editing and troubleshooting techniques in-depth.
["ToolsAndCommands"] - GUI and command-line tool documentation.
FileFormats - Description of native FreeSurfer file formats, as well as external file formats used by FreeSurfer.
CoordinateSystems - Details on the voxel and RAS coordinate systems used in FreeSurfer.
DevelopersGuide - Information for developers of the FreeSurfer code-base (Martinos Center internal).
Support
WikiGuidelines
BeginnersGuides
Acknowledgements
FreeSurfer is brought to you by [http://www.cortechs.net CorTechs], [http://crisp.cit.nih.gov/crisp/CRISP_LIB.getdoc?textkey=6641264&p_grant_num=5P41RR014075-05&p_query=&ticket=10459360&p_audit_session_id=48433183&p_keywords= NCRR/P41RR14075], R01 RR16594-01A1, and our ["Contributors"].