Results 76 - 100 of 363 results out of about 3777 pages. (1.21 seconds)
- FsTutorial/MulitModalFmriIndividual . . . 9 matches
- ...orial is to get you acquainted with the
concepts need to perform fMRI integration in FreeSurfer by interacting
with the data from an individual subject. You will not learn how to
p...
- FsTutorial/GroupAnalysis_tktools . . . 9 matches
- ... are the commands that you need to run before getting started:
{{{
tcsh
source your_freesurfer_dir/SetUpFreeSurfer.csh
setenv SUBJECTS_DIR $TUTORIAL_DATA/buckner_data/tutorial_sub...
- FsPalm . . . 9 matches
- ...{{{#!html
<h1>Integrating FreeSurfer and PALM</h1>
}}}
<<TableOfContents(3)>>
=== Introduction ===
fspalm is a FreeSurfer script written to aid in the use of Permutation Analysis ...
- CoursePrep . . . 9 matches
- ...= How to Prepare for the FreeSurfer Course =
== "Required" Preparation ==
If you are a beginner to !FreeSurfer, the following content is HIGHLY recommended to enhance your enjoym...
- Brainstorm . . . 9 matches
- ...analysis (visualization, processing and advanced source modeling).
Integration with Freesurfer (product of François Tade) includes the following:
== Subject co-registration ==
Th...
- mri_vol2vol . . . 8 matches
- ...vol - Resamples a volume into another field-of-view using varous types of matrices (!FreeSurfer, FSL, SPM, and MNI).
= Synopsis =
mri_vol2vol
= Arguments =
== Required Flagged ...
- WMH-SynthSeg . . . 8 matches
- ... work around this by downloading WMH-SynthSeg independently (from https://github.com/freesurfer/freesurfer/) and running it from FreeSurfer 7.4.1. Apologies for the inconvenience!'...
- UnixTutorial . . . 8 matches
- ...nals? ==
Throughout this course you will be using the Unix terminal to interact with FreeSurfer and access data. Many computer programs for scientific use are designed to be operat...
- SynthSR . . . 8 matches
- ...= SynthSR =
'''''This functionality was made available in version 7.3.0 of FreeSurfer.'''''
<<BR>>
<<BR>>
'''''Please note that version 2.0 of the tool was released in the develop...
- SubmillimeterRecon . . . 8 matches
- ...bmillimeter resolution =
See also HighFieldRecon
This page describes how to run the FreeSurfer recon-all for data with voxel sizes less than 1mm3 at native resolution. Several Fre...
- SoftwareEngineer . . . 8 matches
- ...
= Software Engineer - Job Opening =
FreeSurfer is a multi-platform suite of software tools for the analysis of brain imaging data in use by thousands of neuroscientists, enginee...
- PetSurferKmTutorial . . . 8 matches
- ...effect in the bindind potentials.
= Getting the Data (not necessary for the Boston FreeSurfer Course) =
= Analyzing an Individual Subject =
Change directory into the project fol...
- LabelsClutsAnnotationFiles . . . 8 matches
- ...Color Lookup Tables and Annotation Files =
This page discusses the basic concepts of FreeSurfer files that relate to identifying regions-of-interest for surfaces and volumes, namel...
- FsTutorial/FuncRegistration . . . 8 matches
- ...[[FsTutorial|top]] | [[FsTutorial/SpmFreeSurfer|previous]]
== FreeSurfer Tutorial: Registration of functional and structural data (25 minutes of exercises) ==
In FreeSurfer, a pa...
- FsFastTutorialV4.5/930_Run_functional_and_structural_registration . . . 8 matches
- ...ctory where you keep the subjects whose anatomical data have been reconstructed with FreeSurfer..
=== INTERFACING WITH FREESURFER ===
Linking into Freesurfer allows the user to v...
- bbregister . . . 7 matches
- ... required that you have an anatomical scan of the
subject that has been analyzed in freesurfer. Those using bbregister should site: Greve, D. N., and Fischl, B. (2009). "Accurate...
- ResearchAssistant . . . 7 matches
- ... working in a fast-paced computational neuroimaging lab well known for its software, FreeSurfer. The lab is comprised of faculty, postdocs, graduate students, and research assistan...
- QATools . . . 7 matches
- ...= FreeSurfer 5.3 QA Tools =
== Deprecated ==
Note: The QA tools described in this page were developed for !FreeSurfer 5.3. For versions 7+, use the following executable to comput...
- NextGenCode . . . 7 matches
- ...
<<TableOfContents(3)>>
''a grab-bag of notes on what we'd like to see in the ideal freesurfer source code environment, and runtime''
== Newer respository ==
* evaluate DVCS li...
- LongitudinalProcessingPreV4.4 . . . 7 matches
- ...g increased interest and popularity in various aspects of neuroscience.
The default FreeSurfer pipeline is designed for the processing of individual data set, and thus not optimal...
- HistoricalReconstruction . . . 7 matches
- ...[[FreeSurferWorkFlows|top]] | [[RecommendedReconstruction|previous]] | [[SubcorticalSegmentation|next]]
This workflow uses the older version of FreeSurfer, in which manual editing...
- FsTutorial/MultiModalDtiIndividual_tktools . . . 7 matches
- ...s to give you experience with the integration of Diffusion Tensor Imaging (DTI) with FreeSurfer. The data were collected at MGH as part of the MIND.
= DTI Basics =
It is assumed t...
- FsTutorial/GroupAnalysisDng . . . 7 matches
- ...tutorial is designed to introduce you to the "command-line" group
analysis stream in FreeSurfer (as opposed to QDEC which is
GUI-driven), including correction for multiple comparis...
- FsFastFunctionalConnectivityWalkthrough . . . 7 matches
- ...ased analysis documentation
as found in [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.fsfast.ppt|FS-FAST powerpoint]] and the [[http://surfer.nmr.mgh.harvard.edu/fswiki/F...
- FileFormats . . . 7 matches
- ...[[FreeSurferWiki|top]]
= FreeSurfer File Formats =
FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz,...