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- rel7downloads . . . 175 matches
- ...= FreeSurfer Version 7 Release =
This page describes the version 7.X.X releases of FreeSurfer. Below are the install packages and tar archives for download and install.
The *.rpm ...
- FreeSurferForMartinosUsers . . . 64 matches
- ...
= FreeSurfer For Martinos Users =
=== Multiple FreeSurfer distributions can be accessed from any Linux computer on the Martinos network. This page will show you how to access a Fr...
- FreeSurferWiki . . . 53 matches
- ...= FreeSurfer =
##<<Include(FreeSurfer)>>
!FreeSurfer is a software package for the analysis and visualization of structural and functional neuroimaging data from cross-sectional o...
- FreeSurferForMartinosUsersOriginal . . . 51 matches
- ...
= FreeSurfer For Martinos Users =
'''This version of the page is outdated. Please visit [[https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferForMartinosUsers/|the current version...
- TeachYourselfFreeSurfer . . . 38 matches
- ...rent browser to access these slides. ==
= Suggested Steps for Conducting an at-home FreeSurfer Course =
=== Step 1: Download FreeSurfer For your Computer ===
Follow the instruct...
- FreeSurferBeginnersGuide . . . 20 matches
- ...[[FreeSurferWiki|top]]
= FreeSurfer Beginners Guide =
!FreeSurfer is a freely available software package developed by investigators at the [[http://www.nmr.mgh.harvard.edu:|Athin...
- FreeSurferVersion3 . . . 12 matches
- ...
All documentation for the outdated !FreeSurfer version 3.0 is located here:
<<TableOfContents>>
= Subcortical Segmentation =
In automatic subcortical segmentation, each voxel i...
- FreeSurferAnalysisPipelineOverview . . . 12 matches
- ...[[FreeSurferWiki|top]]
----
~+'''FreeSurfer Analysis Pipeline Overview'''+~
----
<<TableOfContents(2)>>
FreeSurfer is a set of software tools for the study of cortical and subco...
- FreeSurferWiki/LCN-CortLobes . . . 9 matches
- ...[[FreeSurferWiki|top]]
= LCN Cortical Lobes Dataset =
The '''LCN-!CortLobes''' dataset is a collection of manually-inspected cortical lobe labels created from FreeSurfer-processi...
- FsTutorial/SpmFreeSurfer . . . 7 matches
- ...[[FsTutorial|top]] | [[FsTutorial/FslFeatFreeSurfer|previous]]
== FreeSurfer Tutorial: Applying FreeSurfer Tools to SPM fMRI Analysis ==
The purpose of these series of exercises ...
- FsTutorial/FslFeatFreeSurfer . . . 6 matches
- ...ls|Back to list of all tutorials]]<<BR>>[[FsTutorial|Back to course page]]<<BR>>
== FreeSurfer Tutorial: Applying FreeSurfer Tools to FSL fMRI Analysis (FEAT) ==
The purpose of th...
- FreeSurferWiki/SurfaceNormal . . . 4 matches
- ...r which is perpendicular to that surface.
The surfaces (white or pial) generated by FreeSurfer are represented in the form of triangular meshes.
In this case, a normal vector ca...
- ToDo/IncorporateFreeSurferCommands . . . 2 matches
- ...people have generously volunteered to incorporate the existing documentation for the FreeSurfer Commands into the wiki. Here is the status of the project:
=== Done ===
AnneBloo...
- PreviousReleaseNotes . . . 82 matches
- ...ot found''''' error. If so, download the [[ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/patches/mris_resample|mris_resample]], copy it into your $FREESURFER_HOME/bin direct...
- SetupConfiguration_Linux . . . 62 matches
- ...
[[DownloadAndInstall|top]] | [[Installation|previous]] | [[TestingFreeSurfer|next]]
= FreeSurfer Setup and Configuration =
== Basic setup ==
The file {{{<freesurfer_installation...
- infantFS-containers . . . 59 matches
- ...= Containers for running FreeSurfer's infant pipeline =
This guide describes how to build and run containers to execute and examine the outputs of FreeSurfer's infant pipeline.
=...
- UserContributions/FAQ . . . 43 matches
- ...send an e-mail to ppj at netfilter dot com dot br
=== Q. What are the advantages of FreeSurfer over VBM? ===
A:
1. FS uses geometry to do inter-subject registration, which exper...
- CourseDescription . . . 43 matches
- ...= FreeSurfer courses =
= The FreeSurfer team is currently hosting virtual courses. Please visit the Virtual Course Page for more details: =
[[https://surfer.nmr.mgh.harvard.edu/fsw...
- FsTutorial/QuestionAnswers . . . 40 matches
- ...iki page contains a historical archive of student questions and answers from various Freesurfer courses. ==
[[https://surfer.nmr.mgh.harvard.edu/cgi-bin/fsurfer/internal/questionsl...
- MacOsInstall . . . 31 matches
- ...tz-2.7.6.dmg|XQuartz 2.7.6]] (macOS versions 10.10 and higher)
----
=== Installing FreeSurfer ===
Download the !FreeSurfer installation package from [[DownloadAndInstall|this pa...
- ThalamicNuclei . . . 27 matches
- ...PLEASE NOTE THAT:'''''
<<BR>>
'''''1. THERE IS A BUG IN quantifyThalamicNuclei.sh IN FREESURFER 7.0, 7.1 AND 7.1.1; PLEASE REPLACE $FREESURFER_HOME/bin/quantifyThalamicNuclei.sh BY...
- StriatumParcellation_Choi2012 . . . 27 matches
- ...[[FreeSurferWiki|top]]
= Striatal Parcellation Estimated by Intrinsic Functional Connectivity =
Data from 1000 young healthy adults were registered using nonlinear deformation of ...
- LinearMixedEffectsModels . . . 27 matches
- ...harvard.edu or jbernal0019[at]yahoo.es. Please, first post any question about LME to Freesurfer mailing list at freesurfer[at]nmr.mgh.harvard.edu.
If you use these tools in your a...
- CerebellumParcellation_Buckner2011 . . . 27 matches
- ...[[FreeSurferWiki|top]]
= Cerebellar Parcellation Estimated by Intrinsic Functional Connectivity =
Data from 1000 young healthy adults were registered using nonlinear deformation o...
- FsTutorial/CapeTown2010CourseSchedule . . . 26 matches
- ...
= FreeSurfer Tutorial and Workshop =
=== Cape Town, South Africa ===
=== 11-12 February 2010 ===
[[http://www.chpc.ac.za/|Centre for High Performance Computing (CHPC)]], [[http:...