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Editor: MeenaMakary
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## page was renamed from brainPET
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This function generates pseudoCT mu-map using SPM8 atlas-based method (David Izquierdo-Garcia et al.)

= Bullet list =
 * item 1

 * item 2, with gap
 * item 3
   * item 3.1
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perl brainPET_ perl brainPET_pCT_AeMir.pl -i /<DIR>/<SUJID>/MR/MPRAGE -f 107000-000005-000001.dcm -c 0

Index

Contents

  1. BrainPET
  2. Aether-Mirror Version
    1. PseudoCT mu-map generation
  3. Bullet list
  4. Supporting Functions
    1. Denoise MPRAGE
    2. ifile2nifti
  5. Development Version

BrainPET

HI

Aether-Mirror Version

PseudoCT mu-map generation

This function generates pseudoCT mu-map using SPM8 atlas-based method (David Izquierdo-Garcia et al.)

Bullet list

  • item 1
  • item 2, with gap
  • item 3
    • item 3.1 

perl brainPET_pCT_AeMir.pl -i /<DIR>/<SUJID>/MR/MPRAGE -f 107000-000005-000001.dcm -c 0

Supporting Functions

Denoise MPRAGE

perl brainPET_denoise_mprage.pl -i /<DIR>/<SUBJID>/MR_PET/cp_iso_mprage.nii -t 25 -s 0

ifile2nifti

perl brainPET_ifile2nifti.pl -i /<DIR>/file.i

Development Version

BrainPET (last edited 2021-11-09 12:13:59 by MeenaMakary)