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## page was renamed from brainPET
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This function generates pseudoCT mu-map using SPM8 atlas-based method (David Izquierdo-Garcia et al.)

---- /!\ '''Warning''' ----

 * For DICOM input:
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perl brainPET_ perl brainPET_pCT_AeMir.pl -i /<DIR>/<SUJID>/MR/MPRAGE -f 107000-000005-000001.dcm -c 0
}}}

 * For NIFTI input
{{{
perl brainPET_pCT_AeMir.pl -i /<DIR>/<SUJID>/MR_PET -f cp_iso_mprage.nii -c 0
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= Devolopment Version = = Development Version =

Index

BrainPET

HI

Aether-Mirror Version

PseudoCT mu-map generation

This function generates pseudoCT mu-map using SPM8 atlas-based method (David Izquierdo-Garcia et al.)


/!\ Warning


  • For DICOM input:

perl brainPET_pCT_AeMir.pl -i /<DIR>/<SUJID>/MR/MPRAGE -f 107000-000005-000001.dcm -c 0
  • For NIFTI input

perl brainPET_pCT_AeMir.pl -i /<DIR>/<SUJID>/MR_PET -f cp_iso_mprage.nii -c 0

Supporting Functions

Denoise MPRAGE

perl brainPET_denoise_mprage.pl -i /<DIR>/<SUBJID>/MR_PET/cp_iso_mprage.nii -t 25 -s 0

ifile2nifti

perl brainPET_ifile2nifti.pl -i /<DIR>/file.i

Development Version

BrainPET (last edited 2021-11-09 12:13:59 by MeenaMakary)