Differences between revisions 4 and 9 (spanning 5 versions)
⇤ ← Revision 4 as of 2021-02-17 13:17:20 →
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Editor: MeenaMakary
Comment:
Deletions are marked like this. Additions are marked like this.
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## page was renamed from brainPET
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= Aether-Mirror Version =
== PseudoCT mu-map generation ==
This function generates pseudoCT mu-map using SPM8 atlas-based method (David Izquierdo-Garcia et al.)
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= Bullet list =
 * item 1

 * item 2, with gap
 * item 3
   * item 3.1


{{{
perl brainPET_pCT_AeMir.pl -i /<DIR>/<SUJID>/MR/MPRAGE -f 107000-000005-000001.dcm -c 0
}}}

= Supporting Functions =
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= Development Version =

Index

Contents

  1. BrainPET
  2. Aether-Mirror Version
    1. PseudoCT mu-map generation
  3. Bullet list
  4. Supporting Functions
    1. Denoise MPRAGE
    2. ifile2nifti
  5. Development Version

BrainPET

HI

Aether-Mirror Version

PseudoCT mu-map generation

This function generates pseudoCT mu-map using SPM8 atlas-based method (David Izquierdo-Garcia et al.)

Bullet list

  • item 1
  • item 2, with gap
  • item 3
    • item 3.1 

perl brainPET_pCT_AeMir.pl -i /<DIR>/<SUJID>/MR/MPRAGE -f 107000-000005-000001.dcm -c 0

Supporting Functions

Denoise MPRAGE

perl brainPET_denoise_mprage.pl -i /<DIR>/<SUBJID>/MR_PET/cp_iso_mprage.nii -t 25 -s 0

ifile2nifti

perl brainPET_ifile2nifti.pl -i /<DIR>/file.i

Development Version

BrainPET (last edited 2021-11-09 12:13:59 by MeenaMakary)