Differences between revisions 2 and 4 (spanning 2 versions)
⇤ ← Revision 2 as of 2011-02-10 10:38:32 →
Size: 1085
Editor: NickSchmansky
Comment:
← Revision 4 as of 2013-02-19 11:26:58 → ⇥
Size: 1185
Editor: NickSchmansky
Comment:
Deletions are marked like this. Additions are marked like this.
Line 3: Line 3:

See also [[http://www.na-mic.org/Wiki/index.php/Mbirn:_Defacer_for_structural_MRI|MBIRN page]]
Line 20: Line 22:
mri_deface orig.mgz talairach_mixed_with_skull.gca face.gca orig_defaced.mgz ./mri_deface orig.mgz talairach_mixed_with_skull.gca face.gca orig_defaced.mgz

Automated Defacing Tools

defacing_figure.jpg

See also MBIRN page

Note: A license file is no longer necessary to use these tools:

Use gunzip to decompress these downloads, ie.: 

gunzip mri_deface-v1.22-Linux64.gz
cp mri_deface-v1.22-Linux64.gz mri_deface
chmod a+x mri_deface
gunzip talairach_mixed_with_skull.gca.gz
gunzip face.gca.gz

Then, example usage, using your orig.mgz: 

./mri_deface orig.mgz talairach_mixed_with_skull.gca face.gca orig_defaced.mgz

AutomatedDefacingTools (last edited 2022-08-05 14:31:35 by DougGreve)