Diff for "AutomatedDefacingTools"

Differences between revisions 1 and 4 (spanning 3 versions)

Automated Defacing Tools

Note: A license file is no longer necessary to use these tools:

mri_deface v1.22 for Linux 64bit
mri_deface v1.22 for Linux
mri_deface v1.22 for Mac OSX Leopard Intel
talairach_mixed_with_skull.gca
face.gca

Use gunzip to decompress these downloads, ie.:

gunzip mri_deface-v1.22-Linux64.gz
cp mri_deface-v1.22-Linux64.gz mri_deface
chmod a+x mri_deface
gunzip talairach_mixed_with_skull.gca.gz
gunzip face.gca.gz

Then, example usage, using your orig.mgz:

./mri_deface orig.mgz talairach_mixed_with_skull.gca face.gca orig_defaced.mgz

-  ⇤ ← Revision 1 as of 2009-07-22 19:01:49 → 
  Size: 831
  Editor: NickSchmansky
  Comment:
+   ← Revision 4 as of 2013-02-19 11:26:58 → ⇥
  Size: 1185
  Editor: NickSchmansky
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 3:
+See also [[http://www.na-mic.org/Wiki/index.php/Mbirn:_Defacer_for_structural_MRI|MBIRN page]]
-Line 10:
+Line 12:
-Example:
+Use gunzip to decompress these downloads, ie.:
-Line 12:
+Line 14:
-mri_deface orig.mgz talairach_mixed_with_skull.gca face.gca orig_defaced.mgz
+gunzip mri_deface-v1.22-Linux64.gz
cp mri_deface-v1.22-Linux64.gz mri_deface
chmod a+x mri_deface
gunzip talairach_mixed_with_skull.gca.gz
gunzip face.gca.gz
-Line 14:
+Line 20:
+Then, example usage, using your orig.mgz:
{{{
./mri_deface orig.mgz talairach_mixed_with_skull.gca face.gca orig_defaced.mgz
}}}